Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1442 109 5e-19 seq62796 98.7 8e-16 seq7695 89.7 4e-13 seq10229 86.0 5e-12 >seq1442 Length=7791 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || ||||| | || Sbjct 5864 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 5805 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | | ||| || |||| || ||||| || ||||||||||| || || || || || Sbjct 5804 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 5745 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| |||||| |||| || |||||| Sbjct 5744 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 5685 Query 22399 ATTCAAAA 22406 || || || Sbjct 5684 ATCCAGAA 5677 >seq62796 Length=4303 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || ||| |||| || || ||||| | | Sbjct 2697 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 2756 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | |||| ||||| || || ||||||||||| || || || || || Sbjct 2757 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 2816 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| ||||| | ||| |||||| Sbjct 2817 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 2876 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || | || ||||| ||||||| || Sbjct 2877 ATTCAGAAGGAGTCGACGCTGCACCTTGTGTTGCGTCTGCGCGGTGG 2923 >seq7695 Length=5764 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || ||||| || |||| || || ||||| | | Sbjct 5508 ATGCAGATTTTCGTCAAGACGCTGACGGGTAAGACCATCACGCTCGACGTGGAGCCGTCG 5567 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| ||||||||||| || || ||||| || Sbjct 5568 GACTCGATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 5627 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| | ||| |||||| Sbjct 5628 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 5687 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 5688 ATCCAGAAGGAGTCGAC 5704 >seq10229 Length=4391 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || || |||| || || || || | | Sbjct 2527 ATGCAGATTTTCGTCAAGACGTTGACGGGCAAGACCATCACGCTCGACGTAGAGCCGTCG 2586 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || || || ||||| ||||||||||| || || ||||| || Sbjct 2587 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 2646 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| | ||| |||||| Sbjct 2647 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 2706 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 2707 ATCCAGAAGGAGTCGAC 2723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419357990355580