Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq36052 96.9 3e-15 seq20999 96.9 3e-15 seq8913 96.9 3e-15 seq7695 96.9 3e-15 seq637 96.9 3e-15 seq62796 89.7 4e-13 seq51638 87.8 1e-12 seq10229 87.8 1e-12 seq62410 86.0 5e-12 seq64538 84.2 2e-11 >seq36052 Length=4305 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||||||||||||||| |||||||| || | Sbjct 3061 ACCACCGCGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 3002 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || |||| |||| ||||||||||| || |||||||||||||| || Sbjct 3001 -AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 2948 >seq20999 Length=2285 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||||||||||||||| |||||||| || | Sbjct 279 ACCACCGCGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 220 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || |||| |||| ||||||||||| || |||||||||||||| || Sbjct 219 -AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 166 >seq8913 Length=3353 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||||||||||||||| |||||||| || | Sbjct 2007 ACCACCGCGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCG- 2065 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || |||| |||| ||||||||||| || |||||||||||||| || Sbjct 2066 AAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 2120 >seq7695 Length=5764 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 5734 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 5676 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || || ||||||||||| || ||| Sbjct 5675 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 5616 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 5615 GATGCCCTCCTTGTCCTGAATCTTCTGCTT 5586 >seq637 Length=2185 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||||||||||||||| |||||||| || | Sbjct 833 ACCACCGCGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCG- 891 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || |||| |||| ||||||||||| || |||||||||||||| || Sbjct 892 AAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 946 >seq62796 Length=4303 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || |||||||| || ||||| |||||||||||||||||| || || | || || Sbjct 3878 AGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCTCAGCGTGCG 3820 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||| || || |||||||||||||| || ||| | || ||| Sbjct 3819 ACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTC 3760 Query 34029 TTTGTCCATAATTTTTTGCTT 34049 |||||| || |||||||| Sbjct 3759 CTTGTCCTGGATCTTTTGCTT 3739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||| ||| || || ||||| |||||||||||||||||| || || Sbjct 2923 CCACCGCGCAGACGCAACACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCT 2865 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || ||||| |||||||| || ||| Sbjct 2864 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 2805 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || |||||||| Sbjct 2804 GATGCCCTCCTTGTCCTGGATCTTTTGCTT 2775 >seq51638 Length=8654 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 33916 AGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTC 33974 |||||||| || ||||| ||||||||| |||||||| || || | || || |||| Sbjct 8423 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCGGCCGTC 8481 Query 33975 GTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTC 34034 |||| ||||||||||| || ||||| |||||||| || ||| | || ||| ||||| Sbjct 8482 CTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 8541 Query 34035 CATAATTTTTTGCTT 34049 | ||| || ||||| Sbjct 8542 CTGAATCTTCTGCTT 8556 >seq10229 Length=4391 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 33916 AGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGTC 33974 |||||||| || ||||| ||||||||| |||||||| || || | || || |||| Sbjct 2738 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCTCAGCGTGCGGCCGTC 2680 Query 33975 GTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTC 34034 |||| ||||||||||| || || ||||||||||| || ||| | || ||| ||||| Sbjct 2679 CTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 2620 Query 34035 CATAATTTTTTGCTT 34049 | ||| || ||||| Sbjct 2619 CTGAATCTTCTGCTT 2605 >seq62410 Length=6674 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || |||||||| || ||||| ||||||||||||||| || || || | || || Sbjct 1638 AGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTC-GCTCAGCGTGCG 1696 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||| || || |||||||||||||| || ||| | || ||| Sbjct 1697 ACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTC 1756 Query 34029 TTTGTCCATAATTTTTTGCTT 34049 |||||| || |||||||| Sbjct 1757 CTTGTCCTGGATCTTTTGCTT 1777 >seq64538 Length=4600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 189/277 (68%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 39936 GCCGCGGGCATGGACCTGAGGAGCGCATACGACTACGTGATTCCTCGCAA-CGACCGAAT 39994 |||||||| |||||||| | || ||||| |||||| || ||| || | || Sbjct 2908 GCCGCGGGTCTGGACCTGTCGGCTGCTTACGATGCCGTGATCCC-CGCGGGCGGC--AAG 2964 Query 39995 G--CTGGTGAAGACGGACATTGCTCTACAAC-TACCCAAAGAGTGCTACGGTAGAATAGC 40051 | || || ||||||||| | | || | | ||||| | | ||||||| | | || Sbjct 2965 GGCCTCGTCAAGACGGACCTGG-TCATCGCCGTACCCGACGGCTGCTACGCGCGCGTGGC 3023 Query 40052 GCCTCGGTCCGGACTGGCGCTGAAGCACGGTATCGACATTTCGGCCGGCGTCATAGATTC 40111 ||| || |||||||| ||||| ||| | ||||||| |||||||| || || | Sbjct 3024 GCCGCGCTCCGGACTCGCGCTCAAGAAGTTCATCGACACGGGCGCCGGCGTGATCGACGC 3083 Query 40112 TGACTACACGGGCAACGTGGGCGTGGTGATGGTGAACAACGGAGACGAGGCCTTTGTGGT 40171 |||||| ||||||||||||||| | || | ||| ||| | ||||| ||| || Sbjct 3084 CGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCACGCGGCCGAGGACTTCCCCGT 3143 Query 40172 GCTTCGAGGAGACCGCATCGCCCAGCTCATACTGGAG 40208 || ||||||||| | || |||||||| || ||| Sbjct 3144 CAAACGCGGAGACCGCGTGGCGCAGCTCATCCTCGAG 3180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396712371130264