Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq17601 125 2e-23 seq13047 116 8e-21 seq66235 105 1e-17 seq26165 105 1e-17 seq14701 105 1e-17 seq5951 105 1e-17 seq16526 102 2e-16 seq36642 86.0 1e-11 >seq17601 Length=1722 Score = 125 bits (138), Expect = 2e-23 Identities = 452/694 (65%), Gaps = 35/694 (5%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 791 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 732 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 731 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 672 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || |||| | || | |||| | ||||| |||| ||| || || || Sbjct 671 CTTCCACACCTGTCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 612 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAG------CGATACCTG 333547 || || ||||| || ||| | |||| | || | | | ||| || ||| Sbjct 611 CTTACCGGCACCGTTGGGGCCAAGCACAGCGATACGGCTGGACAGAGCGCACGTCACCGA 552 Query 333548 GGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 333606 | || |||| || | | | || ||||| || |||| | | | || Sbjct 551 GATGTT---GTTGATCGACG----GCTTGGGGGTACCAGGGTACTGGTA-CGAGCAGTTG 500 Query 333607 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 333665 || || ||||||| |||| |||| | | ||||| || ||||| ||| Sbjct 499 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGGG 440 Query 333666 AAC-----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 333720 ||| | ||||| ||| || ||| || ||||||| | | ||||| Sbjct 439 AACGTGAACTTCACGTTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGCT 385 Query 333721 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 333780 || || ||||| || || || |||||||| |||||||||| || | |||| Sbjct 384 TCTGCTCAACGAAGAGAGAAAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCGT 328 Query 333781 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 333840 | |||||||| ||| || || ||||||||| ||||||||||| ||||| || | | Sbjct 327 AGTGGATAATGTTGGTACACACGTTGTCGAGGAAGCCGGAGTCGTGGGACACCATGATGG 268 Query 333841 ACG-AAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAG 333897 | | | |||| | | | | ||||||| ||| || ||||| ||||| ||| Sbjct 267 AGGTGACCGTCGGCACGCTCG-TCAGGTAGTTC--TCGAGCCAGGCGACGTTCTTGACAT 211 Query 333898 AAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTG 333957 | ||||| |||||||| ||||| || || | | || ||||| ||||| ||||| | Sbjct 210 CCAAGTGGTTCGTCGGCTCATCAAGCAGCAGAATGTCAGCCTTCAGCAGCATGGCACGCG 151 Query 333958 CAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 || |||||||||| ||||| || || ||||| Sbjct 150 ACAGCTCGAGTTTCATCTTCCAACCACCCGAAAG 117 >seq13047 Length=3013 Score = 116 bits (128), Expect = 8e-21 Identities = 451/695 (65%), Gaps = 37/695 (5%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 932 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 991 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 992 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 1051 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || |||| | || | |||| | ||||| |||| ||| || || || Sbjct 1052 CTTCCACACCTGTCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 1111 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCT 333546 || || ||||| || ||| | |||| | || | | ||| || || ||| Sbjct 1112 CTTACCGGCACCGTTGGGGCCAAGCACAGCGATACGGCTCGACAGAGCGCA-CGTCACCG 1170 Query 333547 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 333605 | || |||| || | | | || ||||| || |||| | | | || Sbjct 1171 AGATGTT---GTTGATCGACG----GCTTGGGGGTACCAGGGTACTGGTA-CGAGCAGTT 1222 Query 333606 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 333664 || || ||||||| |||| |||| | | ||||| || ||||| || Sbjct 1223 GGTAAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCGGCAAGGAAACCAGGCTCCGG 1282 Query 333665 GAAC-----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 333719 |||| | ||||| ||| || ||| || ||||||| | | ||||| Sbjct 1283 GAACGTGAACTTCACGTTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGC 1337 Query 333720 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 333779 || || ||||| || || || |||||||| |||||||||| || | ||| Sbjct 1338 TTCTGCTCNACGAAGAGAGAAAGGTTACCCTTGTAGATCTTCAGCTTACGG---GTCTCG 1394 Query 333780 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 333839 || ||||| || ||| || || ||||||||| || |||||||| ||||| || | | Sbjct 1395 TAGTGGATGATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGGGACACCATGATG 1454 Query 333840 CACGAAAC-GTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACA 333896 | | || ||| | | | | ||||||| ||| || ||||| ||||| ||| Sbjct 1455 GAGGTGACAGTCGGCACGCTCG-TCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACA 1511 Query 333897 GAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGT 333956 | ||||| |||||||| ||||| || || | | || ||||| ||||| ||||| Sbjct 1512 TCCAAGTGGTTCGTCGGCTCATCAAGCAGCAGAATGTCAGCCTTCAGCAGCATGGCACGC 1571 Query 333957 GCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 | || |||||||||| ||||| || || ||||| Sbjct 1572 GACAGCTCGAGTTTCATCTTCCAACCACCCGAAAG 1606 >seq66235 Length=2726 Score = 105 bits (116), Expect = 1e-17 Identities = 258/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| |||||| ||| || | ||||||||||| | | || ||| Sbjct 620 TTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAAC 561 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 ||| | ||||| || ||||||||| | ||| | |||| ||| || ||||| || || Sbjct 560 GAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGC-CTCATGTACTCCAA 502 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 ||| ||||||||| || || || || | | ||| | || || || | Sbjct 501 GCTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGA 443 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAA 243582 ||| | || ||| | | ||| | | || || | ||| || |||||||| || | Sbjct 442 TCGAGCACGAGTTCGTGCGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAATTCGGGG 384 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| |||||||| | | | |||| ||| | Sbjct 383 CTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCG 324 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || | |||||| |||||||| || | || ||||| | || ||||| || || || Sbjct 323 AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAG 264 Query 243703 ACTAACTTCTTCGAAAAGCGTGT 243725 || ||||| ||||| ||||| || Sbjct 263 ACCAACTTTTTCGAGAAGCGCGT 241 >seq26165 Length=1295 Score = 105 bits (116), Expect = 1e-17 Identities = 258/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| |||||| ||| || | ||||||||||| | | || ||| Sbjct 74 TTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAAC 133 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 ||| | ||||| || ||||||||| | ||| | |||| ||| || ||||| || || Sbjct 134 GAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGC-CTCATGTACTCCAA 192 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 ||| ||||||||| || || || || | | ||| | || || || | Sbjct 193 GCTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGA 251 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAA 243582 ||| | || ||| | | ||| | | || || | ||| || |||||||| || | Sbjct 252 TCGAGCACGAGTTCGTGCGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAATTCGGGG 310 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| |||||||| | | | |||| ||| | Sbjct 311 CTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCG 370 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || | |||||| |||||||| || | || ||||| | || ||||| || || || Sbjct 371 AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAG 430 Query 243703 ACTAACTTCTTCGAAAAGCGTGT 243725 || ||||| ||||| ||||| || Sbjct 431 ACCAACTTTTTCGAGAAGCGCGT 453 >seq14701 Length=527 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||||||| ||||| |||| ||||||||||| || || ||||| || Sbjct 228 GGGGAAGCCCTCAAGCTGGCCGTTGGCAATGGCGCGCATCAGCGTCGACTTACCACAACC 169 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || ||||||||||| |||| |||||||| || | || | |||||||| Sbjct 168 GTTGGGACCGCACAGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAG 109 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 334336 ||||| | ||||| || || || || || ||||| Sbjct 108 CAGAATCATACCACCGTAAGCGAGCGAGAACTCACA 73 >seq5951 Length=1254 Score = 105 bits (116), Expect = 1e-17 Identities = 258/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| |||||| ||| || | ||||||||||| | | || ||| Sbjct 1181 TTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAAC 1122 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 ||| | ||||| || ||||||||| | ||| | |||| ||| || ||||| || || Sbjct 1121 GAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGC-CTCATGTACTCCAA 1063 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 ||| ||||||||| || || || || | | ||| | || || || | Sbjct 1062 GCTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGA 1004 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAA 243582 ||| | || ||| | | ||| | | || || | ||| || |||||||| || | Sbjct 1003 TCGAGCACGAGTTCGTGCGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAATTCGGGG 945 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| |||||||| | | | |||| ||| | Sbjct 944 CTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCG 885 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || | |||||| |||||||| || | || ||||| | || ||||| || || || Sbjct 884 AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAG 825 Query 243703 ACTAACTTCTTCGAAAAGCGTGT 243725 || ||||| ||||| ||||| || Sbjct 824 ACCAACTTTTTCGAGAAGCGCGT 802 >seq16526 Length=573 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||||||| ||||| |||| ||||||||||| || || || || || Sbjct 227 GGGGAATCCCTCAAGCTGGCCGTTGGCAATGGCGCGCATCAGCGTCGACTTGCCACAACC 286 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || ||||||||||| |||| |||||||| || | || | |||||||| Sbjct 287 GTTGGGACCGCACAGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAG 346 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACA 334336 ||||| | ||||| || || || || || ||||| Sbjct 347 CAGAATCATACCACCGTAAGCGAGCGAGAACTCACA 382 >seq36642 Length=3786 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || ||||||||||| || || || || |||||| || ||| ||| | || ||| ||| Sbjct 1261 TTGGTGAAAATATAACGAGCGCTGGCTGCATCCTTGCCGCCCATCAAACGCGTACCAAAC 1320 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 || || ||| ||| || |||||| |||||||||||| | ||||| || | ||| Sbjct 1321 TGACCGATTGGCGACAGGAGGTGGATGTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTG 1380 Query 297554 ACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAA 297613 ||||| || |||| | | ||||| ||||| || ||| ||||||| || || Sbjct 1381 ACGATACAGCCCTGCAAACTTTGCTCGCCGTGGTGGTATGCGGAGTGCTCTGACACATAG 1440 Query 297614 CCGCTGAACTGTGCAACCTTCA 297635 || | ||||| ||||||| Sbjct 1441 CCAGCCAGTTGTGCCACCTTCA 1462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101857901824200