Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq66235 178 2e-39 seq26165 150 2e-31 seq5951 150 2e-31 >seq66235 Length=2726 Score = 178 bits (196), Expect = 2e-39 Identities = 400/590 (68%), Gaps = 22/590 (4%) Strand=Plus/Plus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||| ||||| ||||| || | || ||| | Sbjct 225 CTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCAT 284 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | || || ||||||||| ||| | || | | ||| || | | | || Sbjct 285 GTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAG 344 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| || | ||| |||| ||||||| |||| | | || ||||| ||||| || Sbjct 345 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAG 404 Query 125932 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | ||| ||||||| ||| | |||| | | ||| || ||| || || ||||||| Sbjct 405 CTCCACA-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGA 463 Query 125991 TGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CA 126044 | |||| | | | | || || ||| || |||| |||| | || Sbjct 464 TCTCGTGCACGCGGCTCTCC---GGCAGCTTGTTCACCAGCTTG--GAGTACATGAGGCA 518 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 || | || || ||| | |||||||||||| ||| || || |||||||||| ||| | Sbjct 519 CG-CGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGC 577 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||||| |||||| || | || || || ||||||||||||| Sbjct 578 CAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGA 637 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACT-TTGTGTCA 126223 | |||||||| |||||||| | || ||||| | | || || ||| | ||| Sbjct 638 TGCCCTCCACGGCTGCGAACGCCAGCAGGCGCTCCGGGTACGA-CGACACTCGCGGGTCG 696 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTC 126282 ||||||| | |||||| ||||| || |||| | |||||||| || | ||| || | Sbjct 697 CACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCGCGC 756 Query 126283 A--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 | ||| | |||||| || | | ||| ||||||||| | || ||||| Sbjct 757 AGCAAGTGGTCCTTC---TCCGTCGCATCCTTGATGTACGTGTCAATGAG 803 >seq26165 Length=1295 Score = 150 bits (166), Expect = 2e-31 Identities = 309/454 (68%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||| ||||| ||||| || | || ||| | Sbjct 469 CTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCAT 410 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | || || ||||||||| ||| | || | | ||| || | | | || Sbjct 409 GTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAG 350 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| || | ||| |||| ||||||| |||| | | || ||||| ||||| || Sbjct 349 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAG 290 Query 125932 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | ||| ||||||| ||| | |||| | | ||| || ||| || || ||||||| Sbjct 289 CTCCACA-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGA 231 Query 125991 TGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CA 126044 | |||| | | | | || || ||| || |||| |||| | || Sbjct 230 TCTCGTGCACGCGGCTCTCC---GGCAGCTTGTTCACCAGCTTG--GAGTACATGAGGCA 176 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 || | || || ||| | |||||||||||| ||| || || |||||||||| ||| | Sbjct 175 CG-CGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGC 117 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||||| |||||| || | || || || ||||||||||||| Sbjct 116 CAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGA 57 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 | |||||||| |||||||| | || ||||| Sbjct 56 TGCCCTCCACGGCTGCGAACGCCAGCAGGCGCTC 23 >seq5951 Length=1254 Score = 150 bits (166), Expect = 2e-31 Identities = 309/454 (68%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||| ||||| ||||| || | || ||| | Sbjct 786 CTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCAT 845 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | || || ||||||||| ||| | || | | ||| || | | | || Sbjct 846 GTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAG 905 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| || | ||| |||| ||||||| |||| | | || ||||| ||||| || Sbjct 906 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAG 965 Query 125932 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | ||| ||||||| ||| | |||| | | ||| || ||| || || ||||||| Sbjct 966 CTCCACA-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGA 1024 Query 125991 TGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CA 126044 | |||| | | | | || || ||| || |||| |||| | || Sbjct 1025 TCTCGTGCACGCGGCTCTCC---GGCAGCTTGTTCACCAGCTTG--GAGTACATGAGGCA 1079 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 || | || || ||| | |||||||||||| ||| || || |||||||||| ||| | Sbjct 1080 CG-CGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGC 1138 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||||| |||||| || | || || || ||||||||||||| Sbjct 1139 CAGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGA 1198 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 | |||||||| |||||||| | || ||||| Sbjct 1199 TGCCCTCCACGGCTGCGAACGCCAGCAGGCGCTC 1232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596813502742560