Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq62796 141 1e-28 seq62410 140 4e-28 seq7695 129 6e-25 seq1442 125 8e-24 seq51638 122 9e-23 seq10229 118 1e-21 >seq62796 Length=4303 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||| | |||| || |||||| ||||| ||||| || ||| || || | Sbjct 2912 ACGCAACACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACC 2853 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || || ||||||||||| | || | || |||||| Sbjct 2852 GTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 2793 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| ||||| |||| ||| | | | || ||| || ||||| |||| ||||| Sbjct 2792 GTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 2734 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| || ||||| || ||||| ||||| Sbjct 2733 TCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 2697 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| ||||| ||||| || ||| || || |||| || Sbjct 3870 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 3811 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| || || ||||||||||||| || | || |||||||||| Sbjct 3810 AAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 3751 Query 42119 GATTTTTTGTTTGA 42132 ||| ||||| |||| Sbjct 3750 GATCTTTTGCTTGA 3737 >seq62410 Length=6674 Score = 140 bits (154), Expect = 4e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| ||||| || || || ||| || || |||| || Sbjct 1646 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTCAGCGTGCGACCGTCCTC 1705 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| || || ||||||||||||| || | || |||||||||| Sbjct 1706 AAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 1765 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| ||||| |||| ||| | | | || ||| || ||||| |||| |||||| || | Sbjct 1766 GATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCT 1824 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| |||||||| || ||||| ||||| Sbjct 1825 TGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1855 >seq7695 Length=5764 Score = 129 bits (142), Expect = 6e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 5723 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 5664 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || ||||| ||||| ||||||||||||| || | || |||||| Sbjct 5663 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 5604 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| || || || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 5603 GTCCTGAATCTTCTGCTTCA-CGTTGTCAATCGAGTCCGACGGCTCCACGTCGAGCGTGA 5545 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||| || ||||| |||||||| || || || |||||| Sbjct 5544 TGGTCTTACCCGTCAGCGTCTTGACGAAAATCTGCATT 5507 >seq1442 Length=7791 Score = 125 bits (138), Expect = 8e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 5675 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 5734 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | || |||||||||| |||||| || |||| | | | Sbjct 5735 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 5793 Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 || | ||||| || ||||| || | ||||||||| |||||||| || ||||| ||| Sbjct 5794 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 5853 Query 42198 AAGATTTGCAT 42208 ||||| ||||| Sbjct 5854 AAGATCTGCAT 5864 >seq51638 Length=8654 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| || ||| || || |||| || Sbjct 8425 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 8484 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| || || ||||||||||| | || | || |||||||||| Sbjct 8485 CAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 8544 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || || || || | ||| | | | || ||| || ||||| |||| ||||||||| | Sbjct 8545 AATCTTCTGCTTCA-CGTTGTCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTCT 8603 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| |||||||| || ||||| ||||| Sbjct 8604 TGCCCGTCAGCGTCTTGACGAAGATCTGCAT 8634 >seq10229 Length=4391 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| || |||||| || || ||||| || ||| || || |||| || Sbjct 2736 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 2677 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| ||||||||||||| || | || |||||||||| Sbjct 2676 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 2617 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || || || || | ||| | | | || ||| || || || |||| ||||||||| | Sbjct 2616 AATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCTACGTCGAGCGTGATGGTCT 2558 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||||||| | |||||| || || || |||||| Sbjct 2557 TGCCCGTCAACGTCTTGACGAAAATCTGCATT 2526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542721654146880