Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq50881 122 4e-23 seq67281 109 3e-19 >seq50881 Length=8092 Score = 122 bits (134), Expect = 4e-23 Identities = 383/588 (65%), Gaps = 14/588 (2%) Strand=Plus/Minus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || || |||||||||||||| || ||| || || ||| | |||||| || | Sbjct 4064 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACGTTGGCGCTGAGCTGC 4005 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 66089 | || | ||||||||| | | ||| | | |||| ||||||||| || ||| | Sbjct 4004 ATTGCTGAGGCCCAGAAGACGGAGGGCGGAGTCTGCGCCTTCATCGACGCAGAGCATGCC 3945 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 | ||| | | |||||| ||| || || || || | ||| || || |||| Sbjct 3944 ATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 3885 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || ||| | ||||| | || |||||||||| || ||| ||| ||| || | || Sbjct 3884 CCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGATACGCTCATCAGGTCGGGAGCCGTG 3825 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 | || | || ||||| |||||| || ||||||||||| |||||||| || || || Sbjct 3824 GACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTGGAGGGTGAA 3765 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||| ||| | | ||||| || || || ||| |||||| |||| ||||| Sbjct 3764 ATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGAAAGCTC 3705 Query 66330 ACCGGCACGATTGCCAGCACCAAC-ACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAA 66388 || || || | ||| ||||| | || | | | |||| ||| | || |||| Sbjct 3704 ACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTATCTTCCTGAACCAGATTCGTCAGAA 3646 Query 66389 GATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTT 66448 | | || | | | || ||| | |||| || | ||||| | || ||||| | Sbjct 3645 GGTGGGGATCAT---CTTCGGATCTCCTGAGGTTACGTCGGGTGGCACAGCGCTGCGTTA 3589 Query 66449 CTACGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGA 66505 |||||| || || | |||| | |||| || |||| | ||||| ||||| | Sbjct 3588 CTACGCGTCTGTAAGGCTGGACATTCGTCGCAAGACGGCCATC---AAGGAGGGCGACCA 3532 Query 66506 GGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 || |||||||||| ||| |||||||| | ||||||||||| || Sbjct 3531 GGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCGAAGAACAAGCTTGC 3484 >seq67281 Length=12622 Score = 109 bits (120), Expect = 3e-19 Identities = 272/411 (66%), Gaps = 9/411 (2%) Strand=Plus/Plus Query 66146 GCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGA 66205 |||||| ||| | || || | || |||||||||| ||| ||| ||| ||| || | Sbjct 8735 GCAGCCGGACTCGGGTGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGAGC 8794 Query 66206 GGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGG 66265 ||| | || | || | ||| |||||| || ||||||||||| |||||||| ||||| Sbjct 8795 GGTGGACCTCGTGGTGCTCGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTGGAAGG 8854 Query 66266 GGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAA 66325 || || |||||| ||| | | ||||| || || || ||| |||||| |||| || Sbjct 8855 TGAAATGGGGGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGGAA 8914 Query 66326 GCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGA 66385 ||| || || || | ||| ||||| || | | |||| ||| | || | Sbjct 8915 GCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATTCGTCA 8974 Query 66386 GAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCG 66445 |||| | || | | | || || | |||| || | ||||| | ||| ||||| Sbjct 8975 GAAGGTGGGAATCAT---CTTTGGATCTCCTGAGGTTACGTCGGGTGGCACGGCGCTGCG 9031 Query 66446 CTTCTACGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGA 66502 | |||||| || || | |||| | || | || |||| | ||||| ||||| Sbjct 9032 TTACTACGCGTCTGTAAGGCTGGACATTCGTCGTAAGACGGCCATC---AAGGAGGGCGA 9088 Query 66503 TGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 ||| |||||||||| ||| |||||||| | ||||||||| || || Sbjct 9089 CCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGC 9139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242256651128144