Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq50353 100 2e-16 seq64994 95.1 9e-15 seq50352 95.1 9e-15 seq5799 95.1 9e-15 seq3129 95.1 9e-15 >seq50353 Length=2169 Score = 100 bits (110), Expect = 2e-16 Identities = 169/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 ||||| |||| || || ||||| | ||| | ||||||||||| ||| | | Sbjct 465 ACGGCGGGCGCGCACCGCCTGTGGTCGCACCGCGGCTACAAGGCCAAGCTGCCGCTGCGC 524 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 ||| | || ||| ||| |||| |||| || ||||||| ||||| || | Sbjct 525 GTGGTGCTCATGCTGTGCAACTCGATGGCCTTCGAGGGCACCATCTTCGAGTGGTCGCGC 584 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || ||||||||| ||| ||||||||||||||||| |||||| | | | Sbjct 585 GACCACCGCGTGCACCACAAGGCCTCGGACACGACGGCCGACCCGCACAACTCGGGCCGC 644 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGATCTCG 108594 || ||| ||||||||| |||| ||| ||||| || |||| || ||||| | || Sbjct 645 GGCCTCTTCTTCTCGCACATGGGCTGGGTCATGGTGCGCAAGCACAAGAACGTGCGCGCG 704 Query 108595 GCCGG 108599 ||||| Sbjct 705 GCCGG 709 >seq64994 Length=6123 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| ||||||| || Sbjct 5426 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGAGCGC 5485 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| | | | || |||| ||| ||||| |||| ||||| || | | Sbjct 5486 CGACCCGCACAACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTGGTCAA 5545 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | |||||| |||||| Sbjct 5546 GAAGGACCCCAAGGTGATCAAGGCCGG 5572 >seq50352 Length=1308 Score = 95.1 bits (104), Expect = 9e-15 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 ||||| |||| || || ||||| | ||| | ||||||||||| ||| | | Sbjct 242 ACGGCGGGCGCGCACCGCCTGTGGTCGCACCGCGGCTACAAGGCCAAGCTGCCGCTGCGC 183 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 ||| | || ||| ||| |||| |||| || ||||||| ||||| || | Sbjct 182 GTGGTGCTCATGCTGTGCAACTCGATGGCCTTCGAGGGCACCATCTTCGAGTGGTCGCGC 123 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || ||||||||| ||| ||||||||||||||||| |||||| | | | Sbjct 122 GACCACCGCGTGCACCACAAGGCCTCGGACACGACGGCCGACCCGCACAACTCGGGCCGC 63 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGAC 108579 || ||| ||||||||| |||| ||| ||||| || |||| || Sbjct 62 GGCCTCTTCTTCTCGCACATGGGCTGGGTCATGGTGCGCAAGCAC 18 >seq5799 Length=1667 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| ||||||| || Sbjct 1410 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGAGCGC 1469 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| | | | || |||| ||| ||||| |||| ||||| || | | Sbjct 1470 CGACCCGCACAACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTGGTCAA 1529 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | |||||| |||||| Sbjct 1530 GAAGGACCCCAAGGTGATCAAGGCCGG 1556 >seq3129 Length=1672 Score = 95.1 bits (104), Expect = 9e-15 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| | ||| ||| | || |||||||||||||| ||||||| || Sbjct 258 CACCATCTTCCACTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGACACGAGCGC 199 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| | | | || |||| ||| ||||| |||| ||||| || | | Sbjct 198 CGACCCGCACAACTCGGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTGGTCAA 139 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGG 108599 ||||||||| | |||||| |||||| Sbjct 138 GAAGGACCCCAAGGTGATCAAGGCCGG 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381436249619808