Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq66235 161 1e-34 seq26165 147 2e-30 seq5951 147 2e-30 seq62796 127 2e-24 seq7695 114 1e-20 seq1442 105 7e-18 seq51638 100 3e-16 seq10229 93.3 4e-14 >seq66235 Length=2726 Score = 161 bits (178), Expect = 1e-34 Identities = 497/759 (65%), Gaps = 31/759 (4%) Strand=Plus/Minus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 ||||||| | || |||||||||||| |||| |||||||| ||| || ||||||||| Sbjct 973 ACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGTGACGGCATCGTGA 914 Query 52153 ACATTAACCTCATCGAGTACATGCAGCG--GAACGTTCCGGAACTCGAGGCGCAATACTT 52210 || ||||| | | || | |||| ||| || | || || ||||| | | ||| Sbjct 913 ACGAGAACCTGGCCATGAACTT-CAGCAATGAA-GTGCAGGTACCGGAGGCCCGCTGCTT 856 Query 52211 TTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGA 52270 || ||| || | |||||| | | ||| ||||| |||| ||||||||||| Sbjct 855 CTACGGTTTCCAGATCGCGATCGAGAACATCCACTCGGAGGTGTATTCGCTGCTCATTGA 796 Query 52271 GCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACG-TGC 52329 | || || |||| | ||| ||| ||||| || |||| ||| | | Sbjct 795 CACGTACATCAAGGATGCGACGGAGAAGGACCACTTGCTGCGCGCCATCGAT-ACGATCC 737 Query 52330 CGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGA-----GAGCGACACCGC 52384 |||| || || || || || ||||| | |||||| ||| ||| | | || Sbjct 736 CGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGT 677 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 | | |||||| || |||| ||||| || |||||| | || || || ||| Sbjct 676 ACC-----CGGAGCGCCTGCTGGCGTTCGCAGCCGTGGAGGGCATCTTCTTCTCGGGCTC 622 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 || | ||||||| | | || | | ||| | ||||| ||||||| ||| || Sbjct 621 GTTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAA 562 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAA 52561 |||| |||| || ||||| || ||||||||||||| ||||||||| |||| ||| Sbjct 561 CGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCCAA 502 Query 52562 GACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG---GAGGC 52618 | | |||| | || || |||| | | || | | || | || || Sbjct 501 GCTG---GTGAAC---AAGCTGC---CGGAGAGCCGCGTGCACGAGATCGTGCGCGACGC 451 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 |||| | ||||| | ||||| | | | |||| || || |||||| | |||||||| Sbjct 450 GGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGCATGAA 391 Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 || | ||||||| ||||||||||||| ||||| || |||||| || ||| || Sbjct 390 TTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGG 331 Query 52739 GCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 | | ||| || ||||| || ||||| || | ||| ||| || ||||| | Sbjct 330 TGTGTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCA 271 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||||||||||||||||| || |||||||| Sbjct 270 GGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 232 >seq26165 Length=1295 Score = 147 bits (162), Expect = 2e-30 Identities = 304/449 (68%), Gaps = 15/449 (3%) Strand=Plus/Plus Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 |||||| || |||| ||||| || |||||| | || || || ||| || | || Sbjct 23 GAGCGCCTGCTGGCGTTCGCAGCCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCC 82 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 ||||| | | || | | ||| | ||||| ||||||| ||| |||||| |||| Sbjct 83 ATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATC 142 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAAGACGCGCGTG 52571 || ||||| || ||||||||||||| ||||||||| |||| |||| | ||| Sbjct 143 AGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCCAAGCTG---GTG 199 Query 52572 ACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG---GAGGCGGTGGCTATC 52628 | | || || |||| | | || | | || | || |||||| | ||| Sbjct 200 AAC---AAGCTGC---CGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGATC 253 Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688 || | ||||| | | | |||| || || |||||| | |||||||| || | | Sbjct 254 GAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGCATGAATTCGGGGCTC 313 Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAG 52748 |||||| ||||||||||||| ||||| || |||||| || ||| || | | ||| Sbjct 314 ATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCGAAG 373 Query 52749 TACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808 || ||||| || ||||| || | ||| ||| || ||||| ||||||||||| Sbjct 374 ATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACC 433 Query 52809 AACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||||||| || |||||||| Sbjct 434 AACTTTTTCGAGAAGCGCGTGGGCGAGTA 462 >seq5951 Length=1254 Score = 147 bits (162), Expect = 2e-30 Identities = 304/449 (68%), Gaps = 15/449 (3%) Strand=Plus/Minus Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 |||||| || |||| ||||| || |||||| | || || || ||| || | || Sbjct 1232 GAGCGCCTGCTGGCGTTCGCAGCCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCC 1173 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 ||||| | | || | | ||| | ||||| ||||||| ||| |||||| |||| Sbjct 1172 ATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATC 1113 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAAGACGCGCGTG 52571 || ||||| || ||||||||||||| ||||||||| |||| |||| | ||| Sbjct 1112 AGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCCAAGCTG---GTG 1056 Query 52572 ACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG---GAGGCGGTGGCTATC 52628 | | || || |||| | | || | | || | || |||||| | ||| Sbjct 1055 AAC---AAGCTGC---CGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGATC 1002 Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688 || | ||||| | | | |||| || || |||||| | |||||||| || | | Sbjct 1001 GAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGCATGAATTCGGGGCTC 942 Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAG 52748 |||||| ||||||||||||| ||||| || |||||| || ||| || | | ||| Sbjct 941 ATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCGAAG 882 Query 52749 TACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808 || ||||| || ||||| || | ||| ||| || ||||| ||||||||||| Sbjct 881 ATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACC 822 Query 52809 AACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||||||| || |||||||| Sbjct 821 AACTTTTTCGAGAAGCGCGTGGGCGAGTA 793 >seq62796 Length=4303 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||||| || | || | | |||||||| ||||||||||||||||| Sbjct 2924 GCCACCGCGCAGACGCAACACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 2865 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || || | |||| |||||||| ||||| || || Sbjct 2864 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 2805 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| ||||| || | | || | | ||| | || |||||| Sbjct 2804 GATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 2745 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | ||| || || |||||||| || || || |||||||| Sbjct 2744 GTCGAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 2697 >seq7695 Length=5764 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||||| || | || | | |||||||| || |||||||||||||| Sbjct 5735 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 5676 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || |||| |||| || ||||| ||||| || || Sbjct 5675 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 5616 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| || || || || | | || | | ||| | || |||||| Sbjct 5615 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCAC 5556 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| ||| | || ||||| ||||| || || || ||||||||||| Sbjct 5555 GTCGAGCGTGATGGTCTTACCCGTCAGCGTCTTGACGAAAATCTGCAT 5508 >seq1442 Length=7791 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || ||||||||||| | || || ||||||||| || || |||| ||| Sbjct 5675 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 5734 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | |||||||| ||||| || || || || || ||||| |||||| || || | |||| Sbjct 5735 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTG- 5793 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || |||||| || | ||| | || || || ||||| || || ||| Sbjct 5794 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 5853 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 5854 AAGATCTGCATG 5865 >seq51638 Length=8654 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 8441 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 8500 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| || || || || | Sbjct 8501 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 8560 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || |||||| |||| ||| | || || || ||||| || || Sbjct 8561 TTGTCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTG 8620 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 8621 ACGAAGATCTGCATG 8635 >seq10229 Length=4391 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 2720 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 2661 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| || || || || | Sbjct 2660 AAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 2601 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | || ||| || |||| ||| | || || || |||| || || Sbjct 2600 TTGTCGATCGAGTCCGACGGCTCTACGTCGAGCGTGATGGTCTTGCCCGTCAACGTCTTG 2541 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 2540 ACGAAAATCTGCAT 2527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495813704351040