Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq62796 161 9e-35 seq62410 150 2e-31 seq41581 141 9e-29 seq10229 122 8e-23 seq7695 122 8e-23 seq51638 118 1e-21 seq1442 102 8e-17 seq66235 96.9 3e-15 seq26165 96.9 3e-15 seq5951 96.9 3e-15 seq56688 84.2 2e-11 >seq62796 Length=4303 Score = 161 bits (178), Expect = 9e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||||||| | || | ||| ||||| || ||||| ||||| |||| | Sbjct 2923 CCACCGCGCAGACGCAACACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 2864 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 2863 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 2804 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||||| |||| |||| | ||||| ||| || Sbjct 2803 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG-TCGATCGAGTCCGACGGCTCCAC 2745 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| |||||||| || || || |||||||| Sbjct 2744 GTCGAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 2697 Score = 125 bits (138), Expect = 7e-24 Identities = 132/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||| || | ||| ||||| || ||||| ||||| |||| Sbjct 3888 TCCACCACGAAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 3829 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || |||||| |||||| |||||||| ||||| || Sbjct 3828 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 3769 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCG 127055 ||||||||||||||| ||| || ||||||| |||| |||| | ||||| Sbjct 3768 GATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG-TCGATCGAGTCCG 3719 >seq62410 Length=6674 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||| || | ||| ||||| || ||||| || || |||| Sbjct 1628 TCCACCACGAAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 1687 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || |||||| |||||| |||||||| ||||| || Sbjct 1688 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGG 1747 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| ||| || ||||||| |||| |||| | ||||| ||| | Sbjct 1748 GATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTG-TCGATCGAGTCCGACGGCTCCA 1806 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | |||| || | ||| ||||| ||||| || || || || ||||||||| Sbjct 1807 CGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 1856 >seq41581 Length=4797 Score = 141 bits (156), Expect = 9e-29 Identities = 304/453 (67%), Gaps = 6/453 (1%) Strand=Plus/Minus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGA 145817 ||||| ||||||||||||||||||||| |||| ||| | ||| ||||| || ||| Sbjct 2349 GCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT---CGA 2293 Query 145818 CATGACCGAGTACGTGG---GTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAAT 145874 | ||| | | ||| | ||||||| | || || || || ||||| ||| Sbjct 2292 CGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAAT 2233 Query 145875 GAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGT 145934 | | | | | |||||||| | || ||| | || ||| || || ||||| | || Sbjct 2232 GTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGT 2173 Query 145935 TTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTC 145994 || | ||||||||||| | || || | | | ||||||||||| ||| | || Sbjct 2172 CTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACATTCTGCACAGAGCCACTGTC 2113 Query 145995 GGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGAT 146054 | ||| || | |||||||| || || || | ||| | || | || |||| || Sbjct 2112 GTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCAT 2053 Query 146055 GAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCT 146114 || |||| |||||| | | ||||| || || || || || | |||| |||| Sbjct 2052 CAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGGA 1993 Query 146115 GGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCAT 146174 ||| ||||||||| ||||||||||| || || ||||| ||||| | ||| || ||||| Sbjct 1992 CGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCAT 1933 Query 146175 GTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 | |||||||||| ||||| | || ||||| Sbjct 1932 GGGGGCCACCAGCAGCGAGTTGCGCAGTCCGTG 1900 >seq10229 Length=4391 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||| ||||| || || || ||||| |||| || |||||| || || Sbjct 2736 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 2677 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || ||| |||| | |||||||| ||||| || ||||||||||||||| Sbjct 2676 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 2617 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || |||||||| | ||||| ||| | ||||| ||| || |||| || | || | Sbjct 2616 AATCTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCTACGTCGAGCGTGATGGTCT 2558 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| |||| || || || ||||||||||| Sbjct 2557 TGCCCGTCAACGTCTTGACGAAAATCTGCAT 2527 >seq7695 Length=5764 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | ||| ||||| || || || ||||| |||| || |||||| Sbjct 5722 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 5663 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| ||||| || |||||||||||| Sbjct 5662 TCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 5603 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| || |||||||| | ||||| | | | ||||| ||| || |||| || | Sbjct 5602 TCCTGAATCTTCTGCTTCACGTTGT-CAATCGAGTCCGACGGCTCCACGTCGAGCGTGAT 5544 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| || || || ||||||||||| Sbjct 5543 GGTCTTACCCGTCAGCGTCTTGACGAAAATCTGCAT 5508 >seq51638 Length=8654 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||| ||||| || || || ||||| |||| || |||||| || || Sbjct 8425 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 8484 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || ||| |||||| |||||||| || || || ||||||||||||||| Sbjct 8485 CAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 8544 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || |||||||| | |||| |||| | ||| | ||| || |||| || | || | Sbjct 8545 AATCTTCTGCTTCACGTTG-TCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTCT 8603 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||||| || || || || ||||||||| Sbjct 8604 TGCCCGTCAGCGTCTTGACGAAGATCTGCATG 8635 >seq1442 Length=7791 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 5677 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 5736 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| |||||||||||||| | || Sbjct 5737 AGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 5796 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 5797 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 5856 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 5857 ATCTGCATG 5865 >seq66235 Length=2726 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || ||||| ||| | | ||| | |||||||||| || || |||||||| ||||| || Sbjct 398 GGCATGAATTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTA 340 Query 47472 CA-GCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || || ||||| ||| || |||| || ||||| | ||| ||| | Sbjct 339 CTCGCTGGGTGTGTCG-AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGA 281 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 280 TCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 232 >seq26165 Length=1295 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || ||||| ||| | | ||| | |||||||||| || || |||||||| ||||| || Sbjct 296 GGCATGAATTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTA 354 Query 47472 CA-GCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || || ||||| ||| || |||| || ||||| | ||| ||| | Sbjct 355 CTCGCTGGGTGTGTCG-AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGA 413 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 414 TCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 462 >seq5951 Length=1254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || ||||| ||| | | ||| | |||||||||| || || |||||||| ||||| || Sbjct 959 GGCATGAATTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTA 901 Query 47472 CA-GCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || || ||||| ||| || |||| || ||||| | ||| ||| | Sbjct 900 CTCGCTGGGTGTGTCG-AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGA 842 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| ||||||||||||||||||||||||||||||| ||||| || Sbjct 841 TCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 793 >seq56688 Length=2816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 |||| |||| ||| ||||||||| |||||||||||| || || ||||| ||||| | | Sbjct 814 TACATGTTGGACGTGTACGGCTCGATCGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAA 873 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 || || |||||| |||||||||| ||||| | || ||||| Sbjct 874 GCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGCAGACCGTG 917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475070875951680