Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq41581 181 2e-40 seq66235 150 3e-31 seq26165 134 2e-26 seq5951 134 2e-26 >seq41581 Length=4797 Score = 181 bits (200), Expect = 2e-40 Identities = 416/614 (68%), Gaps = 23/614 (4%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| ||||||| ||||||| |||| | || || || |||||||| Sbjct 2391 CTTGTCCACGGTGAACTTGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 2335 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | |||||| || | || ||||| | | | Sbjct 2334 GCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTGCTGATGGT 2275 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGC 204015 |||||||| ||||| ||||| || ||||| || ||| ||| | | | || || || Sbjct 2274 CGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTACGCACCGCGGTCGGC 2215 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 | || | | | | ||||||| |||||||||||||||||| || || || Sbjct 2214 CGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGAC 2155 Query 204076 GTGTTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 ||| | || | | ||| || | ||| | ||||| ||||| || | ||| | Sbjct 2154 GTGGTCCGGGATCGCCTT--GACATTCTGCACAGAGCCACTGTCGTTCAAGA-TCTGGTT 2098 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||| ||||| | | |||||||||| || ||||| ||||| Sbjct 2097 GCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCATCAGGTACTTGTTGAC 2038 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || ||||| | |||||| | ||| || ||| |||| ||| | || |||| Sbjct 2037 GATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGGACGTGTACGGCTCGAT 1978 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | ||||||||| || | ||||| || ||| ||||| |||||||| |||| ||||| Sbjct 1977 AGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCATGGGGGCCACCAGCAG 1918 Query 204313 GGAGTTGCGCACACCGTATTTTTGGAC--CCTGCGCTTCAGAGAGGTCCAGTCGTGCAT- 204369 |||||||||| |||| || || ||| ||| || | | ||||| ||| Sbjct 1917 CGAGTTGCGCAGTCCGTGCTTGATCACGTCCT--CCTTGAGCGTAGCCCAGTTCCACATA 1860 Query 204370 --CG--CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGC 204425 || || ||| | |||||||||||||||||||| |||||||| | ||| | || Sbjct 1859 CCCGACGACGGGG--TGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCGGGCG 1802 Query 204426 TGCCCTTGTACGTC 204439 ||||| | ||||| Sbjct 1801 AGCCCTGGAACGTC 1788 >seq66235 Length=2726 Score = 150 bits (166), Expect = 3e-31 Identities = 474/726 (65%), Gaps = 15/726 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||||||||||||||||||||||| || || || ||||| | |||| ||||| Sbjct 246 CTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT 305 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| |||| ||| ||||| | || || | ||||| | ||| ||||| || || Sbjct 306 CTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGGTCGGCCACGAACTC 365 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | | || || || | |||| || ||||||| || Sbjct 366 GATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCACAGGGAGCGAGTCACG 425 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||| ||| ||||| ||| ||| |||| || | || || | | Sbjct 426 CACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCT-CGTGCACGCGGCTCTCCG 484 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||| || | | | | ||| ||||||||| ||||| ||||| |||| Sbjct 485 GCAGCTTGTTCACCAGCTTGGAGT---ACATGAGGCACGCGAAGTCCGTGTGCATGCCCT 541 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||| | |||||| || | | | ||||| ||||||| || ||| || | Sbjct 542 CGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTCA 601 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| || | | | | || ||||| ||||||||||| || |||||| Sbjct 602 GCCAGAAGATGG-AGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGCTGCGAACGCC 660 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCATTC 160122 | || | ||| | || | || ||||| |||| ||| ||||| | Sbjct 661 AGCAGGCGCTCCGGGTACGACG----ACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 716 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 || ||||| | ||||| || |||| |||| | ||| ||||| |||| | Sbjct 717 CGCTTTCTTCTTCACACACGGGATCGTATCGATGGCGCGCAGCAAGTGGTCCTTCTCCGT 776 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 | |||||||||| || |||| ||| ||| |||| || | ||| | || ||||| Sbjct 777 CGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCCGAGTGGATGTTCTCGAT 836 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 || ||||| || |||||| | |||||| | |||||| || | |||| | Sbjct 837 CGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGTACCTGCACTTCATTGCTGAAGTT 896 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 |||| || | || || | ||||| ||| || ||||| |||| |||||| Sbjct 897 CATGGCCAGGTTCTCGTTCACGATGCCGTCACTGGCAGCGAAGAAGGCCAGCACGTGCTT 956 Query 160363 GATGAA 160368 |||||| Sbjct 957 GATGAA 962 >seq26165 Length=1295 Score = 134 bits (148), Expect = 2e-26 Identities = 286/421 (68%), Gaps = 7/421 (2%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||||||||||||||||||||||| || || || ||||| | |||| ||||| Sbjct 448 CTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT 389 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| |||| ||| ||||| | || || | ||||| | ||| ||||| || || Sbjct 388 CTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGGTCGGCCACGAACTC 329 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | | || || || | |||| || ||||||| || Sbjct 328 GATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCACAGGGAGCGAGTCACG 269 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||| ||| ||||| ||| ||| |||| || | || || | | Sbjct 268 CACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCT-CGTGCACGCGGCTCTCCG 210 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||| || | | | | ||| ||||||||| ||||| ||||| |||| Sbjct 209 GCAGCTTGTTCACCAGCTTGGAGT---ACATGAGGCACGCGAAGTCCGTGTGCATGCCCT 153 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||| | |||||| || | | | ||||| ||||||| || ||| || | Sbjct 152 CGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTCA 93 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| || | | | | || ||||| ||||||||||| || |||||| Sbjct 92 GCCAGAAGATGG-AGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGCTGCGAACGCC 34 Query 160067 A 160067 | Sbjct 33 A 33 >seq5951 Length=1254 Score = 134 bits (148), Expect = 2e-26 Identities = 286/421 (68%), Gaps = 7/421 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||||||||||||||||||||||| || || || ||||| | |||| ||||| Sbjct 807 CTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT 866 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| |||| ||| ||||| | || || | ||||| | ||| ||||| || || Sbjct 867 CTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGGTCGGCCACGAACTC 926 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | | || || || | |||| || ||||||| || Sbjct 927 GATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCACAGGGAGCGAGTCACG 986 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||| ||| ||||| ||| ||| |||| || | || || | | Sbjct 987 CACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCT-CGTGCACGCGGCTCTCCG 1045 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||| || | | | | ||| ||||||||| ||||| ||||| |||| Sbjct 1046 GCAGCTTGTTCACCAGCTTGGAGT---ACATGAGGCACGCGAAGTCCGTGTGCATGCCCT 1102 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||| | |||||| || | | | ||||| ||||||| || ||| || | Sbjct 1103 CGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTCA 1162 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| || | | | | || ||||| ||||||||||| || |||||| Sbjct 1163 GCCAGAAGATGG-AGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGCTGCGAACGCC 1221 Query 160067 A 160067 | Sbjct 1222 A 1222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794436260425920