Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7695 141 2e-28 seq10229 138 3e-27 seq62796 132 1e-25 seq51638 129 1e-24 seq62410 118 2e-21 seq1442 104 6e-17 >seq7695 Length=5764 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| ||||||||| || || Sbjct 5728 CGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 5669 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| |||||||||||||| ||||||||||| || || || Sbjct 5668 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCC 5609 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||||| || | | ||| | | || || || | | Sbjct 5608 TCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCACGTCGAGC 5549 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||||||||| || || || || ||||| || Sbjct 5548 GTGATGGTCTTACCCGTCAGCGTCTTGACGAAAATCTG 5511 >seq10229 Length=4391 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||||||||| || || | || || Sbjct 2738 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 2679 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| |||||||||||||| ||||||||||| || || || || ||| Sbjct 2678 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 2619 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||||| |||| | ||| | | ||||| || | |||||| ||| Sbjct 2618 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCTACGTCGAGCGTGATGGTC 2559 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || || ||||| || Sbjct 2558 TTGCCCGTCAACGTCTTGACGAAAATCTG 2530 >seq62796 Length=4303 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 |||||||| || ||||||||||| || | ||||||||| || || | || || || Sbjct 2905 ACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCA 2846 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || |||||||| |||||||||||||| || || || || ||||| Sbjct 2845 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 2786 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||||||||| ||| |||| | ||| | | || || || | |||||||||||| Sbjct 2785 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTG 2726 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || Sbjct 2725 CCCGTCAGAGTCTTCACGAAGATCTG 2700 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || ||||||||||| || | ||||||||| || || Sbjct 3881 CGAAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTG 3822 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| || ||||||||||| || || || Sbjct 3821 CGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 3762 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACG 199555 || ||||| ||||||||||| ||| Sbjct 3761 TCCTTGTCCTGGATCTTTTGCTTGACG 3735 >seq51638 Length=8654 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||||||||| || || | || || Sbjct 8423 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 8482 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| || ||||||||||| || || || || ||| Sbjct 8483 TCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 8542 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||||| |||| | ||| | | || || || | |||||| ||| Sbjct 8543 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTC 8602 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || || || Sbjct 8603 TTGCCCGTCAGCGTCTTGACGAAGATCTG 8631 >seq62410 Length=6674 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || ||||||||||| || | ||| ||||| || || Sbjct 1635 CGAAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTCAGCGTG 1694 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| || ||||||||||| || || || Sbjct 1695 CGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCC 1754 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||||||||| ||| |||| | ||| | | || || || | | Sbjct 1755 TCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGC 1814 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || ||||| || || || Sbjct 1815 GTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTG 1852 >seq1442 Length=7791 Score = 104 bits (114), Expect = 6e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | || || || |||||||| |||||||||| Sbjct 5675 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 5734 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | |||||||||||||| || || || || ||||| || || ||||| || | Sbjct 5735 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 5794 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | || || |||| |||||| ||||| ||||| || || ||||||| Sbjct 5795 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 5854 Query 199620 AAATTTG 199626 | || || Sbjct 5855 AGATCTG 5861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177829029986244