Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq56688 156 5e-33 seq42745 156 5e-33 seq42744 156 5e-33 seq41581 156 5e-33 seq66235 116 5e-21 seq26165 100 4e-16 seq5951 100 4e-16 >seq56688 Length=2816 Score = 156 bits (172), Expect = 5e-33 Identities = 419/631 (66%), Gaps = 11/631 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||| | ||||| || ||| | || ||||| | | |||| ||| Sbjct 2189 CCGCAGCAAATGATTATGCGCGTGGCGCTTGGCATCCACAAGAGCAACATTGCGGCTGCC 2130 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||| ||||| ||||| | | |||| || || || || || || || Sbjct 2129 CTGGAGACGTACGAGCTCATGTCGCAAATGTTTTTCACGCATGCCACCCCGACACTTTTT 2070 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG--CAAACAAGGAGG 111789 ||||| || || || | || ||| |||| || ||||| |||| || |||| | | Sbjct 2069 AACGCCGGCACGCCGCGCCCTCAACTGTCGTCGTGCTTCCT-ATTGGCCATGCAAG-ACG 2012 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | ||||| | |||||||||| ||| | | | |||||| ||||| || ||||| | Sbjct 2011 ACTCAATTGAAGGCATTTACGACACGTTAAAGCAGTGTGCCTGTATCTCTAAATGGGCCG 1952 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 | ||||| || || || || | || |||||| || || |||| || | Sbjct 1951 GAGGTATTGGCATCAGTATGCACAACATCCGAGCCACGAACAGCTACATCCGAGGCACGA 1892 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || |||| || || || ||||| || || ||||||| ||| ||||| || | Sbjct 1891 ACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGTACG 1832 Query 111970 TAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | |||| | || | || ||||| || |||| |||| | ||||| ||||||| Sbjct 1831 TGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTACTTGGAGCCTTGGCACG 1772 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC- 112085 | ||| | | |||||| | || | ||| ||||| ||| | ||| | | | | || Sbjct 1771 CAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGTAACGAGTTG-CACCGCGCT 1713 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || || || |||| ||| || ||| | || ||||| ||||||||||| || || | | | Sbjct 1712 CGTGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCCAAT 1653 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 ||||| ||| ||| ||||| || || |||| || || |||| || ||| | ||| || Sbjct 1652 GGCAAGTGGAGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGGCGA 1594 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 || || || |||||||| |||||||||| Sbjct 1593 CGAATTCGAGGCCCTCTATGAAAAGTACGAG 1563 >seq42745 Length=3754 Score = 156 bits (172), Expect = 5e-33 Identities = 419/631 (66%), Gaps = 11/631 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||| | ||||| || ||| | || ||||| | | |||| ||| Sbjct 2571 CCGCAGCAAATGATTATGCGCGTGGCGCTTGGCATCCACAAGAGCAACATTGCGGCTGCC 2630 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||| ||||| ||||| | | |||| || || || || || || || Sbjct 2631 CTGGAGACGTACGAGCTCATGTCGCAAATGTTTTTCACGCATGCCACCCCGACACTTTTT 2690 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG--CAAACAAGGAGG 111789 ||||| || || || | || ||| |||| || ||||| |||| || |||| | | Sbjct 2691 AACGCCGGCACGCCGCGCCCTCAACTGTCGTCGTGCTTCCT-ATTGGCCATGCAAG-ACG 2748 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | ||||| | |||||||||| ||| | | | |||||| ||||| || ||||| | Sbjct 2749 ACTCAATTGAAGGCATTTACGACACGTTAAAGCAGTGTGCCTGTATCTCTAAATGGGCCG 2808 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 | ||||| || || || || | || |||||| || || |||| || | Sbjct 2809 GAGGTATTGGCATCAGTATGCACAACATCCGAGCCACGAACAGCTACATCCGAGGCACGA 2868 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || |||| || || || ||||| || || ||||||| ||| ||||| || | Sbjct 2869 ACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGTACG 2928 Query 111970 TAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | |||| | || | || ||||| || |||| |||| | ||||| ||||||| Sbjct 2929 TGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTACTTGGAGCCTTGGCACG 2988 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC- 112085 | ||| | | |||||| | || | ||| ||||| ||| | ||| | | | | || Sbjct 2989 CAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGTAACGAGTTG-CACCGCGCT 3047 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || || || |||| ||| || ||| | || ||||| ||||||||||| || || | | | Sbjct 3048 CGTGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCCAAT 3107 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 ||||| ||| ||| ||||| || || |||| || || |||| || ||| | ||| || Sbjct 3108 GGCAAGTGGAGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGGCGA 3166 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 || || || |||||||| |||||||||| Sbjct 3167 CGAATTCGAGGCCCTCTATGAAAAGTACGAG 3197 >seq42744 Length=3619 Score = 156 bits (172), Expect = 5e-33 Identities = 419/631 (66%), Gaps = 11/631 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||| | ||||| || ||| | || ||||| | | |||| ||| Sbjct 2436 CCGCAGCAAATGATTATGCGCGTGGCGCTTGGCATCCACAAGAGCAACATTGCGGCTGCC 2495 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||| ||||| ||||| | | |||| || || || || || || || Sbjct 2496 CTGGAGACGTACGAGCTCATGTCGCAAATGTTTTTCACGCATGCCACCCCGACACTTTTT 2555 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG--CAAACAAGGAGG 111789 ||||| || || || | || ||| |||| || ||||| |||| || |||| | | Sbjct 2556 AACGCCGGCACGCCGCGCCCTCAACTGTCGTCGTGCTTCCT-ATTGGCCATGCAAG-ACG 2613 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | ||||| | |||||||||| ||| | | | |||||| ||||| || ||||| | Sbjct 2614 ACTCAATTGAAGGCATTTACGACACGTTAAAGCAGTGTGCCTGTATCTCTAAATGGGCCG 2673 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 | ||||| || || || || | || |||||| || || |||| || | Sbjct 2674 GAGGTATTGGCATCAGTATGCACAACATCCGAGCCACGAACAGCTACATCCGAGGCACGA 2733 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || |||| || || || ||||| || || ||||||| ||| ||||| || | Sbjct 2734 ACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGTACG 2793 Query 111970 TAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | |||| | || | || ||||| || |||| |||| | ||||| ||||||| Sbjct 2794 TGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTACTTGGAGCCTTGGCACG 2853 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC- 112085 | ||| | | |||||| | || | ||| ||||| ||| | ||| | | | | || Sbjct 2854 CAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGTAACGAGTTG-CACCGCGCT 2912 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || || || |||| ||| || ||| | || ||||| ||||||||||| || || | | | Sbjct 2913 CGTGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCCAAT 2972 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 ||||| ||| ||| ||||| || || |||| || || |||| || ||| | ||| || Sbjct 2973 GGCAAGTGGAGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGGCGA 3031 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 || || || |||||||| |||||||||| Sbjct 3032 CGAATTCGAGGCCCTCTATGAAAAGTACGAG 3062 >seq41581 Length=4797 Score = 156 bits (172), Expect = 5e-33 Identities = 419/631 (66%), Gaps = 11/631 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||| | ||||| || ||| | || ||||| | | |||| ||| Sbjct 628 CCGCAGCAAATGATTATGCGCGTGGCGCTTGGCATCCACAAGAGCAACATTGCGGCTGCC 687 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||||| ||||| ||||| | | |||| || || || || || || || Sbjct 688 CTGGAGACGTACGAGCTCATGTCGCAAATGTTTTTCACGCATGCCACCCCGACACTTTTT 747 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG--CAAACAAGGAGG 111789 ||||| || || || | || ||| |||| || ||||| |||| || |||| | | Sbjct 748 AACGCCGGCACGCCGCGCCCTCAACTGTCGTCGTGCTTCCT-ATTGGCCATGCAAG-ACG 805 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | ||||| | |||||||||| ||| | | | |||||| ||||| || ||||| | Sbjct 806 ACTCAATTGAAGGCATTTACGACACGTTAAAGCAGTGTGCCTGTATCTCTAAATGGGCCG 865 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 | ||||| || || || || | || |||||| || || |||| || | Sbjct 866 GAGGTATTGGCATCAGTATGCACAACATCCGAGCCACGAACAGCTACATCCGAGGCACGA 925 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || |||| || || || ||||| || || ||||||| ||| ||||| || | Sbjct 926 ACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGTACG 985 Query 111970 TAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | |||| | || | || ||||| || |||| |||| | ||||| ||||||| Sbjct 986 TGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTACTTGGAGCCTTGGCACG 1045 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC- 112085 | ||| | | |||||| | || | ||| ||||| ||| | ||| | | | | || Sbjct 1046 CAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGTAACGAGTTG-CACCGCGCT 1104 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || || || |||| ||| || ||| | || ||||| ||||||||||| || || | | | Sbjct 1105 CGTGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCCAAT 1164 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 ||||| ||| ||| ||||| || || |||| || || |||| || ||| | ||| || Sbjct 1165 GGCAAGTGGAGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGGCGA 1223 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 || || || |||||||| |||||||||| Sbjct 1224 CGAATTCGAGGCCCTCTATGAAAAGTACGAG 1254 >seq66235 Length=2726 Score = 116 bits (128), Expect = 5e-21 Identities = 189/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||||| | |||||| | || | | |||||| | Sbjct 803 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACTTGCTGCGCGCCATCGAT 744 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 102164 || | || ||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 743 ACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 684 Query 102165 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| ||| || | ||||| || | || || || || ||||| ||||||||||| Sbjct 683 TCGTCGTACC----CGGAGCGCCTGCTGGCGTTCGCAGCCGTGGAGGGCATCTTCTTCTC 628 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || |||||| | || | ||||| |||||||| || |||||||| || || |||| Sbjct 627 GGGCTCGTTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 568 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| ||||||||||| Sbjct 567 CTCGAACGAGCTGATCAGCCGTGACGAGGG 538 >seq26165 Length=1295 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||| || || |||||| | || | ||||| |||||||| || Sbjct 47 GTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGC 106 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||| || || ||||||| |||||||| ||| ||||||||||| Sbjct 107 CTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGG 156 >seq5951 Length=1254 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||| || || |||||| | || | ||||| |||||||| || Sbjct 1208 GTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGC 1149 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||| || || ||||||| |||||||| ||| ||||||||||| Sbjct 1148 CTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGG 1099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620181155759040