Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq66235 127 2e-24 seq36642 105 8e-18 seq26165 104 3e-17 seq5951 104 3e-17 >seq66235 Length=2726 Score = 127 bits (140), Expect = 2e-24 Identities = 381/576 (66%), Gaps = 14/576 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 232 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 291 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| |||| | || | ||| |||| | || || ||||| Sbjct 292 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTAC-AGCAGACG 350 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-AC 117163 || | ||| |||| ||||||| | |||| | | || ||||| ||||| || | || Sbjct 351 GTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCAC 410 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 | ||||| | ||| | |||| | | ||| ||| ||||| || |||||| ||| Sbjct 411 A-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGT 469 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | | ||| || || | | || | | | ||| |||| | || Sbjct 470 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAGG--CACG-CGAAG 525 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 ||| ||| | ||||| || ||| || || || || ||||||| ||||| |||||| Sbjct 526 TCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATG 585 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||||| ||| | || | |||||| || || ||||||||||| |||||| Sbjct 586 AGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCC 645 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT-TTGTGTCAAACCATTT 117458 || || ||||| | |||||||| | | | || ||| ||| | ||| |||| || Sbjct 646 ACGGCTGCGAACGCCAGCAGGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTT 704 Query 117459 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTG 117518 | ||||| | ||| ||||||| | ||| || | || | |||||| | || || Sbjct 705 GAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCGCGCAGCAAGTG 764 Query 117519 CTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 117554 | ||| || | ||||||| ||||| ||||||| Sbjct 765 GTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 800 >seq36642 Length=3786 Score = 105 bits (116), Expect = 8e-18 Identities = 241/355 (68%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 ||||| || ||||| ||| | || || || || |||||||| || | || ||||| | Sbjct 1111 CCCGTTCCAATACCATCGCTGCCGTTGACAAGTACCATTGGGATAATCGGGATGTACCAT 1170 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 || || |||||||| | || || || |||||||| | ||| | || || ||||| Sbjct 1171 TCCGGCTCAATTGATTGACCGTCTTCGTCCAAGTATTCGAGCACGTCGTTGTCAAGAGGA 1230 Query 168411 TCAAAGATCTTGCGAGCCTCTT-TGGTAAGTTTTGTGAAAATGTACCTCGT-CTGAGAAG 168468 ||| ||||| ||||| || | ||||| |||||||| || | | ||| | | Sbjct 1231 TCATAGATCCGGCGAGTGAGTTGTTCCAAGTTG-GTGAAAATATAACGAGCGCTG-GCTG 1288 Query 168469 CATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGT 168528 ||||||| || ||||| | |||||||||||| ||||| || || |||| |||| Sbjct 1289 CATCCTTGCCGCCCATCAAACGCGTACCAAACTGACCGATTGGCGACAGGAGGTGGATGT 1348 Query 168529 TGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCC-GCTAAGGATACTTCA 168587 |||| || |||| | |||| || || || | || || || | | || Sbjct 1349 TGTTGCTTCCGACAAAGTCCTGAGCCATGTTGACGATACAGCCCTGCAAACTTTGC-TCG 1407 Query 168588 CCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCA 168642 || |||||||| || || | || | ||||| | ||||||||||||||||||| Sbjct 1408 CCGTGGTGGTATGCGGAGTGCTCTGACACATAGCCAGCCAGTTGTGCCACCTTCA 1462 >seq26165 Length=1295 Score = 104 bits (114), Expect = 3e-17 Identities = 296/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 462 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 403 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| |||| | || | ||| |||| | || || ||||| Sbjct 402 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTAC-AGCAGACG 344 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-AC 117163 || | ||| |||| ||||||| | |||| | | || ||||| ||||| || | || Sbjct 343 GTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCAC 284 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 | ||||| | ||| | |||| | | ||| ||| ||||| || |||||| ||| Sbjct 283 A-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGT 225 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | | ||| || || | | || | | | ||| |||| | || Sbjct 224 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAGG--CACG-CGAAG 169 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 ||| ||| | ||||| || ||| || || || || ||||||| ||||| |||||| Sbjct 168 TCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATG 109 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||||| ||| | || | |||||| || || ||||||||||| |||||| Sbjct 108 AGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCC 49 Query 117400 ACACACGCAAACGCAAAAAGGCGCTC 117425 || || ||||| | |||||||| Sbjct 48 ACGGCTGCGAACGCCAGCAGGCGCTC 23 >seq5951 Length=1254 Score = 104 bits (114), Expect = 3e-17 Identities = 296/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 793 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 852 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| |||| | || | ||| |||| | || || ||||| Sbjct 853 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTAC-AGCAGACG 911 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-AC 117163 || | ||| |||| ||||||| | |||| | | || ||||| ||||| || | || Sbjct 912 GTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCAC 971 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 | ||||| | ||| | |||| | | ||| ||| ||||| || |||||| ||| Sbjct 972 A-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGT 1030 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | | ||| || || | | || | | | ||| |||| | || Sbjct 1031 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAGG--CACG-CGAAG 1086 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 ||| ||| | ||||| || ||| || || || || ||||||| ||||| |||||| Sbjct 1087 TCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATG 1146 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||||| ||| | || | |||||| || || ||||||||||| |||||| Sbjct 1147 AGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCC 1206 Query 117400 ACACACGCAAACGCAAAAAGGCGCTC 117425 || || ||||| | |||||||| Sbjct 1207 ACGGCTGCGAACGCCAGCAGGCGCTC 1232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589447368859680