Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq62796 145 2e-29 seq62410 129 1e-24 seq1442 109 1e-18 seq56688 105 1e-17 seq42745 105 1e-17 seq42744 105 1e-17 seq41581 105 1e-17 >seq62796 Length=4303 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| |||||||| || || ||||| || ||||| ||||| ||| || || | || || Sbjct 2909 CAACACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTC 2850 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || |||||||| || || || ||||| || || ||||| || ||||| Sbjct 2849 CTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 2790 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || |||||||||||||| || || | |||||| ||||| || || || | ||| Sbjct 2789 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGT 2730 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||| ||| || ||||| | ||||| Sbjct 2729 CTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 2697 Score = 113 bits (124), Expect = 1e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||| ||||| ||| || || | || || || Sbjct 3869 ACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCA 3810 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 3809 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 3750 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || |||||||||||||| || || | |||||| Sbjct 3749 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGA 3718 >seq62410 Length=6674 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||| || || ||| || || | || || || Sbjct 1647 ACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTCAGCGTGCGACCGTCCTCA 1706 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 1707 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 1766 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||||||||| || || | |||||| ||||| || || || | |||||| Sbjct 1767 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTG 1826 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 1827 CCCGTCAGCGTCTTCACGAAGATCTGCAT 1855 >seq1442 Length=7791 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | || || ||||||||||| || |||||||| Sbjct 5677 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 5736 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || || ||||| || ||||| || ||||| |||||||| || ||| Sbjct 5737 AGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 5796 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| |||| || ||||| || || || | ||||| || |||| || || || || Sbjct 5797 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 5856 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 5857 ATCTGCAT 5864 >seq56688 Length=2816 Score = 105 bits (116), Expect = 1e-17 Identities = 187/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||||||| | ||| | ||||| ||||||||||| ||| ||| |||||| | ||| Sbjct 1703 TTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGG 1644 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 || || || || || || || || |||||||| |||| | || ||| |||||| Sbjct 1643 AGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTGGGGCGACGAATTCGAG 1584 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAA 160768 | || ||||||| ||||| | |||||| | ||| ||| | || ||||| | Sbjct 1583 GCCCTCTATGAAAAGTACGAGACGGAGGGACGCGCCCGCAAGACGATCAACGCCCAGCAG 1524 Query 160769 CTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAG 160828 |||||| ||| | | |||||| ||||| ||| |||||||||| |||||| Sbjct 1523 CTGTGGTTCGCCATATTGGACGCCCAGATCGAGACGGGAGTGCCCTTTATGTTGTACAAG 1464 Query 160829 GATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 || || | |||||| |||||| ||||| Sbjct 1463 GACGCGGCCAACCGCAAGTCGAACCAGCAGAAC 1431 >seq42745 Length=3754 Score = 105 bits (116), Expect = 1e-17 Identities = 187/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||||||| | ||| | ||||| ||||||||||| ||| ||| |||||| | ||| Sbjct 3057 TTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGG 3116 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 || || || || || || || || |||||||| |||| | || ||| |||||| Sbjct 3117 AGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTGGGGCGACGAATTCGAG 3176 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAA 160768 | || ||||||| ||||| | |||||| | ||| ||| | || ||||| | Sbjct 3177 GCCCTCTATGAAAAGTACGAGACGGAGGGACGCGCCCGCAAGACGATCAACGCCCAGCAG 3236 Query 160769 CTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAG 160828 |||||| ||| | | |||||| ||||| ||| |||||||||| |||||| Sbjct 3237 CTGTGGTTCGCCATATTGGACGCCCAGATCGAGACGGGAGTGCCCTTTATGTTGTACAAG 3296 Query 160829 GATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 || || | |||||| |||||| ||||| Sbjct 3297 GACGCGGCCAACCGCAAGTCGAACCAGCAGAAC 3329 >seq42744 Length=3619 Score = 105 bits (116), Expect = 1e-17 Identities = 187/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||||||| | ||| | ||||| ||||||||||| ||| ||| |||||| | ||| Sbjct 2922 TTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGG 2981 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 || || || || || || || || |||||||| |||| | || ||| |||||| Sbjct 2982 AGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTGGGGCGACGAATTCGAG 3041 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAA 160768 | || ||||||| ||||| | |||||| | ||| ||| | || ||||| | Sbjct 3042 GCCCTCTATGAAAAGTACGAGACGGAGGGACGCGCCCGCAAGACGATCAACGCCCAGCAG 3101 Query 160769 CTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAG 160828 |||||| ||| | | |||||| ||||| ||| |||||||||| |||||| Sbjct 3102 CTGTGGTTCGCCATATTGGACGCCCAGATCGAGACGGGAGTGCCCTTTATGTTGTACAAG 3161 Query 160829 GATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 || || | |||||| |||||| ||||| Sbjct 3162 GACGCGGCCAACCGCAAGTCGAACCAGCAGAAC 3194 >seq41581 Length=4797 Score = 105 bits (116), Expect = 1e-17 Identities = 187/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||||||| | ||| | ||||| ||||||||||| ||| ||| |||||| | ||| Sbjct 1114 TTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGG 1173 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 || || || || || || || || |||||||| |||| | || ||| |||||| Sbjct 1174 AGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTGGGGCGACGAATTCGAG 1233 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAA 160768 | || ||||||| ||||| | |||||| | ||| ||| | || ||||| | Sbjct 1234 GCCCTCTATGAAAAGTACGAGACGGAGGGACGCGCCCGCAAGACGATCAACGCCCAGCAG 1293 Query 160769 CTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAG 160828 |||||| ||| | | |||||| ||||| ||| |||||||||| |||||| Sbjct 1294 CTGTGGTTCGCCATATTGGACGCCCAGATCGAGACGGGAGTGCCCTTTATGTTGTACAAG 1353 Query 160829 GATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 || || | |||||| |||||| ||||| Sbjct 1354 GACGCGGCCAACCGCAAGTCGAACCAGCAGAAC 1386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108453383766644