Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3475 89.7 4e-12 seq38157 86.0 5e-11 seq10609 86.0 5e-11 >seq3475 Length=7232 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 429289 ACGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAAC 429348 ||| ||||||||| ||||||| ||| ||||| || ||||| | || || |||| ||| Sbjct 1910 ACGCACATTCAATAGTTTTCCGCGAAGAGGAAACACACCATACTGGTCACGTCCAACAAC 1969 Query 429349 ATTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACA 429408 | ||||| || ||||| | ||||||||||| ||||| ||||||||||| | ||| Sbjct 1970 TGCCAATCCAGCCACTGCAAGGGCCTTAGCTGAATCACCTTCTGTCAAAATAAGCGAACA 2029 Query 429409 TT 429410 || Sbjct 2030 TT 2031 >seq38157 Length=6640 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 429289 ACGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAAC 429348 ||| || |||||| ||||||| ||| ||||| || ||||| | || || |||| ||| Sbjct 441 ACGCACGTTCAATAGTTTTCCGCGAAGAGGAAACACACCATACTGGTCACGCCCAACAAC 382 Query 429349 ATTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACA 429408 ||||||| || ||| | | ||||||||||| ||||| ||||||||||| | ||| Sbjct 381 TGCCAGTCCAGCCACTGCTAGGGCCTTAGCTGAATCACCTTCTGTCAAAATAAGCGAACA 322 Query 429409 TT 429410 || Sbjct 321 TT 320 >seq10609 Length=2612 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 429289 ACGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAAC 429348 ||| ||||||||| ||||||| ||| ||||| || ||||| | || || |||| || Sbjct 1776 ACGCACATTCAATAGTTTTCCGCGAAGAGGAAAGACACCATACTGGTCACGCCCAACCAC 1717 Query 429349 ATTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACA 429408 ||||||| || ||| | | ||||||||||| ||||| ||||||||||| | ||| Sbjct 1716 TGCCAGTCCAGCCACTGCTAGGGCCTTAGCTGAATCACCTTCTGTCAAAATAAGCGAACA 1657 Query 429409 TT 429410 || Sbjct 1656 TT 1655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025470757622680