Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq66235 212 1e-49 seq41581 114 2e-20 seq26165 114 2e-20 seq5951 114 2e-20 seq56688 91.5 3e-13 >seq66235 Length=2726 Score = 212 bits (234), Expect = 1e-49 Identities = 559/848 (66%), Gaps = 21/848 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || |||| Sbjct 1067 TGGCAGATGTACAAGAAGGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 1008 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| || | | |||| || | | |||||| | || ||||| ||||| Sbjct 1007 CACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 948 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || ||| ||| || || ||||||||||| ||| | || |||| | Sbjct 947 CTGGCCTTCTTCGCTGCCAGTGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 888 Query 25660 AGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 | ||||||||| ||| ||||||| || ||||||||||||||||| || ||||| || Sbjct 887 AATGAAGTGCAGGTACC-GGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCGATCGAGAA 829 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGA 25775 | ||||| ||||||||| | ||| || || |||||||| | || | | || Sbjct 828 CATCCACTCGGAGGTGTATTC---GCTGCTCATTGACACGTACATCAAGGATGCGACGGA 772 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || || | || | | |||||||| || || | | |||| ||| |||| || Sbjct 771 GAAGGACCACTTGCTGCGCGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTG 712 Query 25836 GGCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||| | |||||| | | | || || | | ||| ||||| ||| | || || | Sbjct 711 GGCGCTCAAGTGGTGCGACCCGCGAGTG-TCGTCGTACCCGGAGCGCCTGCTGGCGTTCG 653 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAG 25953 | || |||||||||||||| ||| || ||||| ||| ||||||||||||| ||| || Sbjct 652 CAGCCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCCATCTTCTGGCTGAAGAAG 594 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| || ||| ||| || |||||||| |||||| | |||||||| | Sbjct 593 CGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATG 534 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 |||| || || || ||||| | ||| | | | || | || || || | |||| Sbjct 533 CACACGGACTTCGCGTGCCTCATGTACTC---CAAGCTGGTGAAC-AAGCTGCCGGAGAG 478 Query 26074 AC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 | ||| || ||| | || || ||| ||||||| | ||||| Sbjct 477 CCGCGTGCACGAGATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTC 418 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 | |||||||| | |||||| |||| ||||| |||| || Sbjct 417 GCTCCCTGTGGAGCTGATCGGCATGAATTCGGGGCTCATGTGCCAGTACATCGAGTTCGT 358 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACA--GTACGCCTAACCCG 26250 |||||||| |||||||| | |||||| | | | |||||| ||| |||||| Sbjct 357 GGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCGAAGATCTACAACGTA--AAGAACCCG 300 Query 26251 TTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTC 26310 ||||||| ||||| | || ||| || | || ||||||||||| || || ||| | || Sbjct 299 TTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTTTTCGAGAAGCGCGTG 240 Query 26311 GGCGACTA 26318 ||||| || Sbjct 239 GGCGAGTA 232 >seq41581 Length=4797 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 221030 TGTACAGAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTC 221089 || |||||||| ||| | ||| | || | | |||| || |||||| | || | Sbjct 2129 TGCACAGAGCCACTGTCGTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCCGAGC 2070 Query 221090 TCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTC 221149 || |||| |||| | || || |||||| || | ||| ||||| | ||||| | Sbjct 2069 TCGATCAGCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGG 2010 Query 221150 CTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCC 221209 | | ||||| ||| || ||| |||| ||||| ||||||||| || |||||||| ||| Sbjct 2009 CGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCC 1950 Query 221210 GTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 ||| || || |||||||| ||||||||||| ||||||||||||| Sbjct 1949 GTGGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGCAGTCCG 1902 >seq26165 Length=1295 Score = 114 bits (126), Expect = 2e-20 Identities = 293/447 (66%), Gaps = 11/447 (2%) Strand=Plus/Plus Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGC 25934 ||||| ||| | || || || || |||||||||||||| ||| || ||||| ||| | Sbjct 23 GAGCGCCTGCTGGCGTTCGCAGCCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TC 81 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||||| ||| || || |||||| || ||| ||| || |||||||| || Sbjct 82 CATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGAT 141 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT 26054 |||| | |||||||| | |||| || || || ||||| | ||| | | | || | Sbjct 142 CAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTC---CAAGCTGGT 198 Query 26055 CCACAAACCTTCTCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 || || || | |||| | ||| || ||| | || || ||| ||||||| Sbjct 199 GAAC-AAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGATCGAGC 257 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 | ||||| | |||||||| | |||||| Sbjct 258 ACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGCATGAATTCGGGGCTCATGT 317 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCT 26233 |||| ||||| |||| |||||||||| |||||||| | |||||| | | | ||| Sbjct 318 GCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCGAAGATCT 377 Query 26234 ACA--GTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 ||| ||| ||||||||||||| ||||| | || ||| || | || |||||||| Sbjct 378 ACAACGTA--AAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAA 435 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTA 26318 ||| || || ||| | || ||||| || Sbjct 436 CTTTTTCGAGAAGCGCGTGGGCGAGTA 462 >seq5951 Length=1254 Score = 114 bits (126), Expect = 2e-20 Identities = 293/447 (66%), Gaps = 11/447 (2%) Strand=Plus/Minus Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGC 25934 ||||| ||| | || || || || |||||||||||||| ||| || ||||| ||| | Sbjct 1232 GAGCGCCTGCTGGCGTTCGCAGCCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCT-C 1174 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||||| ||| || || |||||| || ||| ||| || |||||||| || Sbjct 1173 CATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGAT 1114 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT 26054 |||| | |||||||| | |||| || || || ||||| | ||| | | | || | Sbjct 1113 CAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTC---CAAGCTGGT 1057 Query 26055 CCACAAACCTTCTCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 || || || | |||| | ||| || ||| | || || ||| ||||||| Sbjct 1056 GAAC-AAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGATCGAGC 998 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 | ||||| | |||||||| | |||||| Sbjct 997 ACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGCATGAATTCGGGGCTCATGT 938 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCT 26233 |||| ||||| |||| |||||||||| |||||||| | |||||| | | | ||| Sbjct 937 GCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCGAAGATCT 878 Query 26234 ACA--GTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAA 26291 ||| ||| ||||||||||||| ||||| | || ||| || | || |||||||| Sbjct 877 ACAACGTA--AAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAA 820 Query 26292 CTTCTTTGAAAAGAGGGTCGGCGACTA 26318 ||| || || ||| | || ||||| || Sbjct 819 CTTTTTCGAGAAGCGCGTGGGCGAGTA 793 >seq56688 Length=2816 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| || ||| |||| ||||| ||||||||| || |||||||| |||||| Sbjct 813 GTACATGTTGGACGTGTACGGCTCGATCGACTCGTTGTTTCCAAGGATCTGGGCCGTGGA 872 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 || || |||||||| ||||||||||| ||||||||| ||| Sbjct 873 AGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGCAGACCG 915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928004984974080