Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq66235 127 2e-24 seq36642 107 2e-18 seq26165 104 3e-17 seq5951 104 3e-17 seq62087 95.1 1e-14 seq36643 95.1 1e-14 >seq66235 Length=2726 Score = 127 bits (140), Expect = 2e-24 Identities = 381/576 (66%), Gaps = 14/576 (2%) Strand=Plus/Minus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||||| ||||| ||||||| | || ||| | || || | |||||| | || Sbjct 800 ATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACTTGCTGCGCGCCATCGATACG 741 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA-AGTCTCG 65066 | || ||| | ||||||| ||| | ||||| | || |||| ||| | ||| ||| Sbjct 740 ATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCG 681 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 || | | | |||||||| | ||||| || |||||||| ||||||||||| || || Sbjct 680 -TCGTACCCGGAGCGCCTGCTGGCGTTCGCAGCCGTGGAGGGCATCTTCTTCTCGGGCTC 622 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| |||||||||| || |||||||| ||||| ||||||| || Sbjct 621 GTTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAA 562 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGAC 65246 || || || ||| || ||||| | ||| ||| || | |||| ||| | | | Sbjct 561 CGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCG-CGTG--CCTCATGTACTC 505 Query 65247 TTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGGTTG 65302 || | | || || ||| | | |||| |||||| || ||||| Sbjct 504 CAAGC-TGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGA 446 Query 65303 AGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCT 65361 ||| ||| | | |||| | ||| | ||||| ||| | || ||||| ||||| || Sbjct 445 CGATCGAGCACGAGTTCGTGCGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAATTCG 387 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GT 65420 | | |||| | ||||||| |||| ||| | || ||||| || || | |||| || Sbjct 386 GGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTACTCGCTGGGTGT 328 Query 65421 GCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGG 65480 | | || | |||| ||||| || || |||| ||||| | || || | || Sbjct 327 GTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGG 268 Query 65481 GAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||| || |||||||| || || || || Sbjct 267 CAAGACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 232 >seq36642 Length=3786 Score = 107 bits (118), Expect = 2e-18 Identities = 244/358 (68%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 14430 TGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAG 14489 ||||||||||||||||||| | ||||| | || | || || |||||||| || || | Sbjct 1462 TGAAGGTGGCACAACTGGCTGGCTATGTGTCAGAGCACTCCGCATACCACCACGGCGA-G 1404 Query 14490 TATCCTTAGC-GGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATT 14548 | || || || | || || || |||| | |||| || |||||||| Sbjct 1403 CAAAGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGTCGGAAGCAACAACATC 1344 Query 14549 AACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCT 14608 |||| || || ||||| |||||||||||| | ||||| || |||||||| | Sbjct 1343 CACCTCCTGTCGCCAATCGGTCAGTTTGGTACGCGTTTGATGGGCGGCAAGGATGCAGC- 1285 Query 14609 CAGA-CGAGGTACATTTTCACAAAACTT--ACCAAGGAGGCTCGCAAGATCTTTGATCCT 14665 ||| | | || |||||||| || ||| | ||| ||||| ||||| ||||||| Sbjct 1284 CAGCGCTCGTTATATTTTCACCAA-CTTGGAACAACTCA-CTCGCCGGATCTATGATCCT 1227 Query 14666 CGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTT 14725 | || || | ||| | ||||||||||| || || | || ||||| || || | Sbjct 1226 CTTGACAACGACGTGCTCGAATACTTGGACGAAGACGGTCAATCAATTGAGCCGGAATGG 1167 Query 14726 TACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 ||||| || | | | |||||||| || || || || | ||| ||||| || ||||||| Sbjct 1166 TACATCCCGATTATCCCAATGGTACTTGTCAACGGCAGCGATGGTATTGGAACGGGTT 1109 >seq26165 Length=1295 Score = 104 bits (114), Expect = 3e-17 Identities = 296/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 |||||||| | ||||| || |||||||| ||||||||||| || || |||||| | Sbjct 23 GAGCGCCTGCTGGCGTTCGCAGCCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCC 82 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || | ||| |||||||||| || |||||||| ||||| ||||||| || || || || Sbjct 83 ATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATC 142 Query 65197 TCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAAT 65256 ||| || ||||| | ||| ||| || | |||| ||| | | | || | | Sbjct 143 AGCCGTGACGAGGGCATGCACACGGACTTCG-CGTG--CCTCATGTACTCCAAGC-TGGT 198 Query 65257 AGACCCACTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAA 65312 || || ||| | | |||| |||||| || ||||| ||| ||| | Sbjct 199 GAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGATCGAGCA 258 Query 65313 AGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCTGAGAAGATGT 65371 | |||| | ||| | ||||| ||| | || ||||| ||||| || | | |||| Sbjct 259 CGAGTTCGTGCGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAATTCGGGGCTCATGT 317 Query 65372 CCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATT 65430 | ||||||| |||| ||| | || ||||| || || | |||| ||| | || Sbjct 318 GCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTACTCGCTGGGTGTGTCGAAGATC 376 Query 65431 TGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAAC 65490 | |||| ||||| || || |||| ||||| | || || | || ||||||||| Sbjct 377 TACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAAC 436 Query 65491 TTCTTTGAGAAGCGAGTTGGGGACTA 65516 || || |||||||| || || || || Sbjct 437 TTTTTCGAGAAGCGCGTGGGCGAGTA 462 >seq5951 Length=1254 Score = 104 bits (114), Expect = 3e-17 Identities = 296/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 |||||||| | ||||| || |||||||| ||||||||||| || || |||||| | Sbjct 1232 GAGCGCCTGCTGGCGTTCGCAGCCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCC 1173 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || | ||| |||||||||| || |||||||| ||||| ||||||| || || || || Sbjct 1172 ATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATC 1113 Query 65197 TCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAAT 65256 ||| || ||||| | ||| ||| || | |||| ||| | | | || | | Sbjct 1112 AGCCGTGACGAGGGCATGCACACGGACTTCG-CGTG--CCTCATGTACTCCAAGC-TGGT 1057 Query 65257 AGACCCACTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAA 65312 || || ||| | | |||| |||||| || ||||| ||| ||| | Sbjct 1056 GAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGATCGAGCA 997 Query 65313 AGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCTGAGAAGATGT 65371 | |||| | ||| | ||||| ||| | || ||||| ||||| || | | |||| Sbjct 996 CGAGTTCGTGCGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAATTCGGGGCTCATGT 938 Query 65372 CCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GTGCCACCCATT 65430 | ||||||| |||| ||| | || ||||| || || | |||| ||| | || Sbjct 937 GCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTACTCGCTGGGTGTGTCGAAGATC 879 Query 65431 TGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAAC 65490 | |||| ||||| || || |||| ||||| | || || | || ||||||||| Sbjct 878 TACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAAC 819 Query 65491 TTCTTTGAGAAGCGAGTTGGGGACTA 65516 || || |||||||| || || || || Sbjct 818 TTTTTCGAGAAGCGCGTGGGCGAGTA 793 >seq62087 Length=11983 Score = 95.1 bits (104), Expect = 1e-14 Identities = 241/358 (67%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 14430 TGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAG 14489 |||||||||||||| |||| | ||||| | || | || |||||||| || || || | Sbjct 7699 TGAAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGCGTACCATCACGGCGA-G 7641 Query 14490 TATCCTTAGC-GGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATT 14548 | || || || | || || || |||| | |||| || |||||||| Sbjct 7640 CAGAGTTTGCAGGGCTGTATCGTCAACATGGCTCAAGACTTTGTTGGAAGCAACAACATC 7581 Query 14549 AACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCT 14608 |||| || || ||||| |||||||||||| | ||||| || |||||||| | Sbjct 7580 CACCTCCTGTCGCCAATCGGTCAGTTTGGTACGCGTTTGATGGGCGGCAAGGATGCAGC- 7522 Query 14609 CAGA-CGAGGTACATTTTCACAAAACTT--ACCAAGGAGGCTCGCAAGATCTTTGATCCT 14665 ||| | | || |||||||| || ||| | ||| ||||| ||||| ||||||| Sbjct 7521 CAGCGCTCGTTATATTTTCACCAA-CTTGGAACAACTCA-CTCGCCGGATCTATGATCCT 7464 Query 14666 CGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTT 14725 | || || | ||| | ||||||||||| || || | || || || || || | Sbjct 7463 CTTGACAACGACGTGCTCGAATACTTGGACGAAGACGGTCAATCGATCGAGCCGGAATGG 7404 Query 14726 TACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 ||||| || | | | |||||||| || || || || | || ||||| || ||||||| Sbjct 7403 TACATCCCGATTATCCCAATGGTACTTGTCAACGGCAGTGACGGTATTGGAACGGGTT 7346 >seq36643 Length=1775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 241/358 (67%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 14430 TGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAG 14489 |||||||||||||| |||| | ||||| | || | || |||||||| || || || | Sbjct 1462 TGAAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGCGTACCATCACGGCGA-G 1404 Query 14490 TATCCTTAGC-GGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATT 14548 | || || || | || || || |||| | |||| || |||||||| Sbjct 1403 CAGAGTTTGCAGGGCTGTATCGTCAACATGGCTCAAGACTTTGTTGGAAGCAACAACATC 1344 Query 14549 AACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCT 14608 |||| || || ||||| |||||||||||| | ||||| || |||||||| | Sbjct 1343 CACCTCCTGTCGCCAATCGGTCAGTTTGGTACGCGTTTGATGGGCGGCAAGGATGCAGC- 1285 Query 14609 CAGA-CGAGGTACATTTTCACAAAACTT--ACCAAGGAGGCTCGCAAGATCTTTGATCCT 14665 ||| | | || |||||||| || ||| | ||| ||||| ||||| ||||||| Sbjct 1284 CAGCGCTCGTTATATTTTCACCAA-CTTGGAACAACTCA-CTCGCCGGATCTATGATCCT 1227 Query 14666 CGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTT 14725 | || || | ||| | ||||||||||| || || | || || || || || | Sbjct 1226 CTTGACAACGACGTGCTCGAATACTTGGACGAAGACGGTCAATCGATCGAGCCGGAATGG 1167 Query 14726 TACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 ||||| || | | | |||||||| || || || || | || ||||| || ||||||| Sbjct 1166 TACATCCCGATTATCCCAATGGTACTTGTCAACGGCAGTGACGGTATTGGAACGGGTT 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596030211596160