Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq41581 154 1e-32 seq56688 149 6e-31 seq62796 114 1e-20 seq62410 109 5e-19 seq7695 105 6e-18 seq51638 95.1 1e-14 seq10229 91.5 1e-13 seq1442 86.0 6e-12 >seq41581 Length=4797 Score = 154 bits (170), Expect = 1e-32 Identities = 369/551 (67%), Gaps = 29/551 (5%) Strand=Plus/Minus Query 138474 CTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCG 138533 || ||||| || || ||||| || |||| | || | || || || |||| ||||| Sbjct 2070 CTCGATCAGCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCG 2011 Query 138534 ACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGC 138593 || ||| |||||| ||| | ||||| | || ||||||||||| || ||||| || Sbjct 2010 GCGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGC 1951 Query 138594 CGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT 138653 ||||| || ||||||||| ||||||| || || || || | |||| ||||||| Sbjct 1950 CGTGGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGCAGTCCGT---GCTTGAT 1894 Query 138654 -TCGT--TCCTTGAGCGACGACCAGTCCCACAAATC--GCTA-GGTTTTTTGTTCCACAT 138707 ||| |||||||||| | ||||| ||||| | | | | || | | |||||| Sbjct 1893 CACGTCCTCCTTGAGCGTAGCCCAGTTCCACATACCCGACGACGGGGTGACGCCCCACAT 1834 Query 138708 ATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAA 138767 ||| |||| || || ||| || ||||| ||| | | ||| ||||| || | Sbjct 1833 GTCGAACTGGAAGATGCCCTTGCTGGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAG 1774 Query 138768 CTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827 || | || | ||| | || ||| | ||| ||||||| || || ||| || | Sbjct 1773 TTCCTTGGCGATCTCCATCGACGTCTCCATAGCAGCATAGTAGATGGTCTCGAAGATGTT 1714 Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACG------GCATGCGGAGCATCGTGAA 138881 || |||||| ||||||| |||||||| ||| |||| ||| | || Sbjct 1713 CTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGA------TAAA 1660 Query 138882 CGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTT 138941 |||||| || || || || ||||| | |||| ||||| ||||||| || ||| | Sbjct 1659 CGCGTCCGCGAGGCCCTGGACGCCAATGCCGATGGGGCGGTGGCGCATGTTGGAC----T 1604 Query 138942 TGCG-GCTTCGAT---AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGA 138997 |||| || ||||| || || ||||| || ||||||| |||||||| || || || Sbjct 1603 TGCGCGCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGA 1544 Query 138998 CCACCTTAGTC 139008 ||||||| ||| Sbjct 1543 CCACCTTGGTC 1533 >seq56688 Length=2816 Score = 149 bits (164), Expect = 6e-31 Identities = 340/505 (67%), Gaps = 29/505 (6%) Strand=Plus/Plus Query 138520 CCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTT 138579 || |||| ||||| || ||| |||||| ||| | ||||| | ||| ||||||||| Sbjct 793 CCAGCCAGCACTCGGCGGTTGTACATGTTGGACGTGTACGGCTCGATCGACTCGTTGTTT 852 Query 138580 CCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAA 138639 || || ||||| ||||||| || ||||||||| ||||||| || || || || | | Sbjct 853 CCAAGGATCTGGGCCGTGGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGCAGA 912 Query 138640 CCGTGAAGCTTGA-TTCGT--TCCTTGAGCGACGACCAGTCCCACAAATC--GCTA-GGT 138693 |||| |||||| ||| |||||||| | | ||||| ||||| | | | | || Sbjct 913 CCGT---GCTTGACCACGTCCTCCTTGAGTGCAGCCCAGTTCCACATACCCGACGACGGG 969 Query 138694 TTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAA 138753 | | |||||| ||| |||| || || ||| ||| ||||| ||| | | ||| Sbjct 970 GTGACGCCCCACATGTCGAACTGGAAGATGCCCTTACTGGCGGGCGAGCCCTGGAACGTC 1029 Query 138754 TCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATA 138813 ||||| || | || | || | ||| | || ||| | ||| ||||||| || Sbjct 1030 TCGTACGGGCCGAGTTCCTTGGCGATCTCCATCGACGTCTCCATAGCAGCATAGTAGATG 1089 Query 138814 GTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACG------GCATG 138867 || ||| || | || |||||| ||||||| |||||||| ||| |||| Sbjct 1090 GTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATG 1149 Query 138868 CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGC 138927 ||| | |||||||| || || || || ||||| | |||| ||||| |||||| Sbjct 1150 AGGA------TAAACGCGTCCGCGAGGCCCTGGACGCCAATGCCGATGGGGCGGTGGCGC 1203 Query 138928 AGATTTGACGCTTTTGCG-GCTTCGAT---AGGATAATAGTTTACATCGATGATTTTGTT 138983 | || ||| ||||| || ||||| || || ||||| || ||||||| ||||| Sbjct 1204 ATGTTGGAC----TTGCGCGCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTT 1259 Query 138984 TAAATTTCGCACGACCACCTTAGTC 139008 ||| || || ||||||||| ||| Sbjct 1260 TAAGTTGCGGGTGACCACCTTGGTC 1284 >seq62796 Length=4303 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| || || | | Sbjct 2697 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 2756 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| || || || || || || || Sbjct 2757 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 2816 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 2817 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 2876 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| | |||||||| ||||||| ||| Sbjct 2877 ATTCAGAAGGAGTCGACGCTGCACCTTGTGTTGCGTCTGCGCGGTGGC 2924 >seq62410 Length=6674 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 1855 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 1796 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||| ||||| || || || || ||||| || Sbjct 1795 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 1736 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||| ||||| | | || || |||||| Sbjct 1735 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTATAAC 1676 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| ||||| || ||| ||||| Sbjct 1675 ATTCAGAAGGAGTCGACGCTGCACCTGGTG 1646 >seq7695 Length=5764 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || ||||| || ||||| || || |||||||| || || | Sbjct 5505 ACAATGCAGATTTTCGTCAAGACGCTGACGGGTAAGACCATCACGCTCGACGTGGAGCCG 5564 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || || ||||| || ||||| || || || || ||||| Sbjct 5565 TCGGACTCGATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGAC 5624 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || | ||||| ||||| || ||||||||||| | | || || || Sbjct 5625 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 5684 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| ||||| |||| |||| || ||| Sbjct 5685 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGC 5735 >seq51638 Length=8654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 8634 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCT 8575 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| || || || || || || || Sbjct 8574 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 8515 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 8514 CAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 8455 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| ||||| || ||| ||||| Sbjct 8454 ATCCAGAAGGAGTCGACGCTGCACCTGGTG 8425 >seq10229 Length=4391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || ||| | || || || || || |||||||| ||||| | Sbjct 2524 ACAATGCAGATTTTCGTCAAGACGTTGACGGGCAAGACCATCACGCTCGACGTAGAGCCG 2583 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || || ||||| || ||||| || || || || ||||| Sbjct 2584 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGAC 2643 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || | ||||| ||||| || ||||||||||| | | || || || Sbjct 2644 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 2703 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| || ||||| ||||| || ||| ||||| Sbjct 2704 AACATCCAGAAGGAGTCGACGCTGCACCTGGTG 2736 >seq1442 Length=7791 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 5864 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 5805 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || || || || || || || Sbjct 5804 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 5745 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||| ||||| || ||||| ||||| Sbjct 5744 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGA 5710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449490825084960