Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq50881 122 4e-23 seq67281 109 3e-19 >seq50881 Length=8092 Score = 122 bits (134), Expect = 4e-23 Identities = 383/588 (65%), Gaps = 14/588 (2%) Strand=Plus/Minus Query 67628 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 67687 || || |||||||||||||| || ||| || || ||| | |||||| || | Sbjct 4064 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACGACGTTGGCGCTGAGCTGC 4005 Query 67688 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCCGAACATTCT 67744 | || | ||||||||| | | ||| | | |||| ||||||||| || ||| | Sbjct 4004 ATTGCTGAGGCCCAGAAGACGGAGGGCGGAGTCTGCGCCTTCATCGACGCAGAGCATGCC 3945 Query 67745 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 67804 | ||| | | |||||| ||| || || || || | ||| || || |||| Sbjct 3944 ATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGACATTGACGCGCTGTACGTCTCGCAG 3885 Query 67805 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 67864 || ||| | ||||| | || |||||||||| || ||| ||| ||| || | || Sbjct 3884 CCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGATACGCTCATCAGGTCGGGAGCCGTG 3825 Query 67865 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 67924 | || | || ||||| |||||| || ||||||||||| |||||||| || || || Sbjct 3824 GACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTGGAGGGTGAA 3765 Query 67925 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 67984 || || ||| ||| | | ||||| || || || ||| |||||| |||| ||||| Sbjct 3764 ATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGAAAGCTC 3705 Query 67985 ACCGGCACGATTGCCAGCACCAAC-ACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAA 68043 || || || | ||| ||||| | || | | | |||| ||| | || |||| Sbjct 3704 ACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTATCTTCCTGAACCAGATTCGTCAGAA 3646 Query 68044 GATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTT 68103 | | || | | | || ||| | |||| || | ||||| | || ||||| | Sbjct 3645 GGTGGGGATCAT---CTTCGGATCTCCTGAGGTTACGTCGGGTGGCACAGCGCTGCGTTA 3589 Query 68104 CTACGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGA 68160 |||||| || || | |||| | |||| || |||| | ||||| ||||| | Sbjct 3588 CTACGCGTCTGTAAGGCTGGACATTCGTCGCAAGACGGCCATC---AAGGAGGGCGACCA 3532 Query 68161 GGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 68208 || |||||||||| ||| |||||||| | ||||||||||| || Sbjct 3531 GGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCGAAGAACAAGCTTGC 3484 >seq67281 Length=12622 Score = 109 bits (120), Expect = 3e-19 Identities = 272/411 (66%), Gaps = 9/411 (2%) Strand=Plus/Plus Query 67801 GCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGA 67860 |||||| ||| | || || | || |||||||||| ||| ||| ||| ||| || | Sbjct 8735 GCAGCCGGACTCGGGTGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGAGC 8794 Query 67861 GGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGG 67920 ||| | || | || | ||| |||||| || ||||||||||| |||||||| ||||| Sbjct 8795 GGTGGACCTCGTGGTGCTCGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTGGAAGG 8854 Query 67921 GGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAA 67980 || || |||||| ||| | | ||||| || || || ||| |||||| |||| || Sbjct 8855 TGAAATGGGGGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGGAA 8914 Query 67981 GCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGA 68040 ||| || || || | ||| ||||| || | | |||| ||| | || | Sbjct 8915 GCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAGATTCGTCA 8974 Query 68041 GAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCG 68100 |||| | || | | | || || | |||| || | ||||| | ||| ||||| Sbjct 8975 GAAGGTGGGAATCAT---CTTTGGATCTCCTGAGGTTACGTCGGGTGGCACGGCGCTGCG 9031 Query 68101 CTTCTACGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGA 68157 | |||||| || || | |||| | || | || |||| | ||||| ||||| Sbjct 9032 TTACTACGCGTCTGTAAGGCTGGACATTCGTCGTAAGACGGCCATC---AAGGAGGGCGA 9088 Query 68158 TGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 68208 ||| |||||||||| ||| |||||||| | ||||||||| || || Sbjct 9089 CCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGC 9139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247231461733056