Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_022087.1 Length=53253 Score E Sequences producing significant alignments: (Bits) Value seq46364 82.4 3e-11 seq46363 82.4 3e-11 seq46362 82.4 3e-11 seq12845 82.4 3e-11 >seq46364 Length=23205 Score = 82.4 bits (90), Expect = 3e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 36628 CACTCGCTCGACGGTCTCGGGCCAGGTCTCCTTGGTGCCGTCTGGCTTGGTGCGGGCGTA 36687 ||| ||||| ||||||||| |||| ||||||||||||||| | |||| ||| | ||| Sbjct 7569 CACGCGCTCCACGGTCTCGAACCAGCGCTCCTTGGTGCCGTCGGCCTTGACGCGCGAGTA 7510 Query 36688 GGTTCGCTTGTACACAAGCTCTCCC 36712 || ||| ||||||| ||||||||| Sbjct 7509 CGTGCGCATGTACACGAGCTCTCCC 7485 >seq46363 Length=9782 Score = 82.4 bits (90), Expect = 3e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 36628 CACTCGCTCGACGGTCTCGGGCCAGGTCTCCTTGGTGCCGTCTGGCTTGGTGCGGGCGTA 36687 ||| ||||| ||||||||| |||| ||||||||||||||| | |||| ||| | ||| Sbjct 1821 CACGCGCTCCACGGTCTCGAACCAGCGCTCCTTGGTGCCGTCGGCCTTGACGCGCGAGTA 1880 Query 36688 GGTTCGCTTGTACACAAGCTCTCCC 36712 || ||| ||||||| ||||||||| Sbjct 1881 CGTGCGCATGTACACGAGCTCTCCC 1905 >seq46362 Length=10744 Score = 82.4 bits (90), Expect = 3e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 36628 CACTCGCTCGACGGTCTCGGGCCAGGTCTCCTTGGTGCCGTCTGGCTTGGTGCGGGCGTA 36687 ||| ||||| ||||||||| |||| ||||||||||||||| | |||| ||| | ||| Sbjct 1821 CACGCGCTCCACGGTCTCGAACCAGCGCTCCTTGGTGCCGTCGGCCTTGACGCGCGAGTA 1880 Query 36688 GGTTCGCTTGTACACAAGCTCTCCC 36712 || ||| ||||||| ||||||||| Sbjct 1881 CGTGCGCATGTACACGAGCTCTCCC 1905 >seq12845 Length=15739 Score = 82.4 bits (90), Expect = 3e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 36628 CACTCGCTCGACGGTCTCGGGCCAGGTCTCCTTGGTGCCGTCTGGCTTGGTGCGGGCGTA 36687 ||| ||||| ||||||||| |||| ||||||||||||||| | |||| ||| | ||| Sbjct 8171 CACGCGCTCCACGGTCTCGAACCAGCGCTCCTTGGTGCCGTCGGCCTTGACGCGCGAGTA 8230 Query 36688 GGTTCGCTTGTACACAAGCTCTCCC 36712 || ||| ||||||| ||||||||| Sbjct 8231 CGTGCGCATGTACACGAGCTCTCCC 8255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170141732399560