Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq62410 132 3e-26 seq51638 132 3e-26 seq1442 132 3e-26 seq62796 122 6e-23 seq7695 118 7e-22 seq10229 113 3e-20 seq36052 105 4e-18 seq20999 105 4e-18 seq8913 105 4e-18 seq637 105 4e-18 >seq62410 Length=6674 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||||||||||||||| || |||| | || Sbjct 1644 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTCAGCGTGCGACCGTCC 1703 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || |||||||| |||| | ||||||||||| Sbjct 1704 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 1763 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||||| |||||| | ||||| || | ||| || || | || || ||| Sbjct 1764 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTC 1823 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || ||||| || |||||||||||| Sbjct 1824 TTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 1856 >seq51638 Length=8654 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 8423 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 8482 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || |||||||| |||| | ||||||||||| Sbjct 8483 TCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 8542 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || ||| | ||||| ||| | ||| || || | || |||||| Sbjct 8543 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTC 8602 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || ||||| || |||||||||||| Sbjct 8603 TTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 8635 >seq1442 Length=7791 Score = 132 bits (146), Expect = 3e-26 Identities = 149/197 (76%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| |||||||| || |||| | || || || ||||| |||||||||| Sbjct 5675 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 5734 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| |||| | ||||||||||| | ||||| || ||||| || Sbjct 5735 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGAC--AT- 5791 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || | ||| || || | || |||||||| ||||| |||||||| Sbjct 5792 -TGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTC 5850 Query 34964 ACAAAGATCTGCATGAT 34980 ||||||||||||||||| Sbjct 5851 ACAAAGATCTGCATGAT 5867 >seq62796 Length=4303 Score = 122 bits (134), Expect = 6e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || |||| | || || || ||||| || ||||| Sbjct 2888 CTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAA 2829 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || |||||||| |||| | ||||||||||| | || ||||| |||||| Sbjct 2828 GATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTT 2769 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| || | ||| || || | || || ||||| ||||| || ||||| || Sbjct 2768 GTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGAGTCTTCAC 2709 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 2708 GAAGATCTGCAT 2697 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||||||||| ||||| || |||| | || Sbjct 3872 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCC 3813 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || |||||||| |||| | ||||||||||| Sbjct 3812 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 3753 Query 34886 TTTATTTTTTGTTTGACG 34903 | || ||||| |||||| Sbjct 3752 TGGATCTTTTGCTTGACG 3735 >seq7695 Length=5764 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 5720 CAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 5661 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||| || || |||||||| |||| | ||||||||||| Sbjct 5660 CTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC 5601 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || ||| | ||||| || | ||| || || | || ||||| Sbjct 5600 CTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGT 5541 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| || ||||| || || |||||||| Sbjct 5540 CTTACCCGTCAGCGTCTTGACGAAAATCTGCAT 5508 >seq10229 Length=4391 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| || |||| | || Sbjct 2738 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 2679 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||||||||| || || |||||||| |||| | ||||||||||| Sbjct 2678 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 2619 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || ||| | ||||| || | ||| || || | || |||||| Sbjct 2618 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCTACGTCGAGCGTGATGGTC 2559 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| | ||||| || || |||||||| Sbjct 2558 TTGCCCGTCAACGTCTTGACGAAAATCTGCAT 2527 >seq36052 Length=4305 Score = 105 bits (116), Expect = 4e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||||||||||||| ||||| |||||||| ||| |||| | || Sbjct 3045 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 2986 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 2985 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 2948 >seq20999 Length=2285 Score = 105 bits (116), Expect = 4e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||||||||||||| ||||| |||||||| ||| |||| | || Sbjct 263 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 204 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 203 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 166 >seq8913 Length=3353 Score = 105 bits (116), Expect = 4e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||||||||||||| ||||| |||||||| ||| |||| | || Sbjct 2023 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 2082 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 2083 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 2120 >seq637 Length=2185 Score = 105 bits (116), Expect = 4e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||||||||||||| ||||| |||||||| ||| |||| | || Sbjct 849 AGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 908 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| |||||||||||||| || |||||||| Sbjct 909 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325405686733508