Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq50881 150 9e-32 seq67281 129 3e-25 >seq50881 Length=8092 Score = 150 bits (166), Expect = 9e-32 Identities = 333/496 (67%), Gaps = 5/496 (1%) Strand=Plus/Minus Query 64829 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 64888 ||||| ||||||||| ||||| || | ||| | | ||||||||||| || ||||| || Sbjct 3969 CGCCTTCATCGACGCAGAGCATGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 3910 Query 64889 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 64948 | | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 3909 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 3850 Query 64949 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 65008 ||| ||| ||| || | || | |||| || | ||| |||||| || ||||| Sbjct 3849 TACGCTCATCAGGTCGGGAGCCGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGT 3790 Query 65009 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 65068 |||||| || ||||| || || || || || ||| || | | ||||| ||||| || Sbjct 3789 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 3730 Query 65069 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC-ACGCTGACGC 65127 |||| ||||| |||| |||||||| || | | |||| ||||| | || | Sbjct 3729 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTA 3671 Query 65128 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCA 65187 ||| | |||||| | || ||||| | || | | | || ||| | |||| | Sbjct 3670 TCTTCCTGAACCAGATTCGTCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGTTA 3614 Query 65188 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 65247 | |||| |||| || || | | |||||| || || | |||| | ||||||| Sbjct 3613 CGTCGGGTGGCACAGCGCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAAGA 3554 Query 65248 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 65307 | || ||||| ||||| ||| |||||||||| || ||||||||| | |||| Sbjct 3553 CGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCGAAGA 3494 Query 65308 ACAAGCTGGCCCCGCC 65323 ||||||| ||| |||| Sbjct 3493 ACAAGCTTGCCTCGCC 3478 >seq67281 Length=12622 Score = 129 bits (142), Expect = 3e-25 Identities = 317/479 (66%), Gaps = 9/479 (2%) Strand=Plus/Plus Query 64848 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 64907 ||| || | ||| | | ||||||||||| || || || ||| | ||| || || Sbjct 8673 CACGCCATTGACGCCCACTACGCCAAGGCTCTGGGCGTCGACATTGACGCGCTGTACGTC 8732 Query 64908 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 64967 ||||||||| | || || | || |||||||||| ||| ||| ||| ||| || Sbjct 8733 TCGCAGCCGGACTCGGGTGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGA 8792 Query 64968 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 65027 | | || | |||| || | ||| |||||| || ||||||||||| || ||||| ||| Sbjct 8793 GCGGTGGACCTCGTGGTGCTCGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTGGAA 8852 Query 65028 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 65087 || || || |||||| || | | ||||| ||||| |||||| ||||| |||| Sbjct 8853 GGTGAAATGGGGGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGG 8912 Query 65088 AAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTG 65144 |||||||| || | | |||| |||| ||| | | ||| | |||||| | Sbjct 8913 AAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA---TCTTCCTGAACCAGATT 8969 Query 65145 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCT 65204 || ||||| | || | | | || || | |||| || |||| |||| ||| Sbjct 8970 CGTCAGAAGGTGGGAATCAT---CTTTGGATCTCCTGAGGTTACGTCGGGTGGCACGGCG 9026 Query 65205 TTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGC 65264 || | | |||||| || || | |||| | ||||| | | || ||||| ||| Sbjct 9027 CTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGTAAGACGGCCATCAAGGAGGGC 9086 Query 65265 GATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 65323 || ||| |||||||||| || ||||||||| | ||||||||| || || |||| Sbjct 9087 GACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGCATCGCC 9145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237137967465892