Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_023689.1 Length=76260 Score E Sequences producing significant alignments: (Bits) Value seq50881 147 1e-30 seq67281 123 1e-23 >seq50881 Length=8092 Score = 147 bits (162), Expect = 1e-30 Identities = 332/496 (67%), Gaps = 5/496 (1%) Strand=Plus/Minus Query 66330 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66389 ||||| ||||||||| ||||| || | ||| | | ||||||||||| || ||||| || Sbjct 3969 CGCCTTCATCGACGCAGAGCATGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 3910 Query 66390 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66449 | | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 3909 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 3850 Query 66450 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66509 ||| ||| ||| || | || | |||| || | ||| |||||| || ||||| Sbjct 3849 TACGCTCATCAGGTCGGGAGCCGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGT 3790 Query 66510 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66569 |||||| || ||||| || || || || || ||| || | | ||||| ||||| || Sbjct 3789 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 3730 Query 66570 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC-ACGCTGACGC 66628 |||| ||||| |||| |||||||| || | | |||| ||||| | || | Sbjct 3729 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTA 3671 Query 66629 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCA 66688 ||| | |||||| | || ||||| | || | | | || ||| | ||| | Sbjct 3670 TCTTCCTGAACCAGATTCGTCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGTTA 3614 Query 66689 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 66748 | |||| |||| || || | | |||||| || || | |||| | ||||||| Sbjct 3613 CGTCGGGTGGCACAGCGCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAAGA 3554 Query 66749 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 66808 | || ||||| ||||| ||| |||||||||| || ||||||||| | |||| Sbjct 3553 CGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCGAAGA 3494 Query 66809 ACAAGCTGGCCCCGCC 66824 ||||||| ||| |||| Sbjct 3493 ACAAGCTTGCCTCGCC 3478 >seq67281 Length=12622 Score = 123 bits (136), Expect = 1e-23 Identities = 316/479 (66%), Gaps = 9/479 (2%) Strand=Plus/Plus Query 66349 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66408 ||| || | ||| | | ||||||||||| || || || ||| | ||| || || Sbjct 8673 CACGCCATTGACGCCCACTACGCCAAGGCTCTGGGCGTCGACATTGACGCGCTGTACGTC 8732 Query 66409 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66468 ||||||||| | || || | || |||||||||| ||| ||| ||| ||| || Sbjct 8733 TCGCAGCCGGACTCGGGTGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGA 8792 Query 66469 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66528 | | || | |||| || | ||| |||||| || ||||||||||| || ||||| ||| Sbjct 8793 GCGGTGGACCTCGTGGTGCTCGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTGGAA 8852 Query 66529 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 66588 || || || |||||| || | | ||||| ||||| |||||| ||||| |||| Sbjct 8853 GGTGAAATGGGGGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGG 8912 Query 66589 AAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTG 66645 |||||||| || | | |||| |||| ||| | | ||| | |||||| | Sbjct 8913 AAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA---TCTTCCTGAACCAGATT 8969 Query 66646 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCT 66705 || ||||| | || | | | || || | ||| || |||| |||| ||| Sbjct 8970 CGTCAGAAGGTGGGAATCAT---CTTTGGATCTCCTGAGGTTACGTCGGGTGGCACGGCG 9026 Query 66706 TTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGC 66765 || | | |||||| || || | |||| | ||||| | | || ||||| ||| Sbjct 9027 CTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGTAAGACGGCCATCAAGGAGGGC 9086 Query 66766 GATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66824 || ||| |||||||||| || ||||||||| | ||||||||| || || |||| Sbjct 9087 GACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGCATCGCC 9145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243692184522492