Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1442 104 2e-17 seq51638 89.7 3e-13 seq62796 86.0 4e-12 >seq1442 Length=7791 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || ||||| ||||| |||| || | || || ||||| || ||| Sbjct 5677 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 5736 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | ||||||||| || |||| | || || ||||| |||||||| || | ||| ||| Sbjct 5737 AGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 5795 Query 33682 ACGG-TGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | | ||||| | |||||||| | |||||| || || || || | || || ||||| Sbjct 5796 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 5855 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 5856 GATCTGCAT 5864 >seq51638 Length=8654 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| ||| || ||||| |||| || Sbjct 8425 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 8484 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| |||||||| || |||| | || || ||||| Sbjct 8485 CAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 8544 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| ||||| |||| | | ||| | | ||| | |||||||| | |||||| || | Sbjct 8545 AATCTTCTGCTTCA-CGTTGTCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTCT 8603 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||| || || ||||||||||| Sbjct 8604 TGCCCGTCAGCGTCTTGACGAAGATCTGCAT 8634 >seq62796 Length=4303 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| ||||| | || || || ||| || || |||||||| ||| Sbjct 2923 CCACCGCGCAGACGCAACACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 2864 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || || || || |||| ||||||||| || |||| Sbjct 2863 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 2804 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || || | | | ||| | | ||| | ||||| Sbjct 2803 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCAC 2745 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGG 33755 ||| | ||||||||| || || || | || || || |||||||||||| |||| Sbjct 2744 GTCGAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATACTTGG 2691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328414232221440