Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq51638 96.9 8e-15 seq7695 87.8 4e-12 seq62796 84.2 5e-11 seq10229 84.2 5e-11 >seq51638 Length=8654 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || || ||||| | || ||||| |||||| Sbjct 8631 CAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCTGAC 8572 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || || || || ||| ||| || Sbjct 8571 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAG 8512 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 8511 CGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 8452 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 8451 CAGAAGGAGTCGACGCTGCACCTGGT 8426 >seq7695 Length=5764 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || || ||||| | || ||||| || ||| Sbjct 5511 CAGATTTTCGTCAAGACGCTGACGGGTAAGACCATCACGCTCGACGTGGAGCCGTCGGAC 5570 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||||| |||||||| || || || || || ||| ||| || Sbjct 5571 TCGATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 5630 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 5631 CGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 5690 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 5691 CAGAAGGAGTCGACGCTGCACCTGGT 5716 >seq62796 Length=4303 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| | || ||||| || ||| | |||| Sbjct 2712 AAGACTCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCGGACTCGATCGACAAC 2771 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||| || || || || || || ||| ||| || | || |||||| Sbjct 2772 GTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 2831 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || || ||| |||||| | ||||| ||||| Sbjct 2832 GCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAACATTCAGAAGGAGTCG 2891 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || |||||||| ||| | || || Sbjct 2892 ACGCTGCACCTTGTGTTGCGTCTGCG 2917 >seq10229 Length=4391 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | || || || || ||||| | || || || || ||| Sbjct 2530 CAGATTTTCGTCAAGACGTTGACGGGCAAGACCATCACGCTCGACGTAGAGCCGTCGGAC 2589 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| |||||||| || || || || || ||| ||| || Sbjct 2590 TCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 2649 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 2650 CGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 2709 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 2710 CAGAAGGAGTCGACGCTGCACCTGGT 2735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180725543141772