Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq62796 104 2e-17 seq7695 104 2e-17 seq51638 95.1 1e-14 seq10229 89.7 5e-13 >seq62796 Length=4303 Score = 104 bits (114), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||||||| || || || || ||||| || || | Sbjct 2890 GACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCG 2831 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || ||||| || | Sbjct 2830 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACG 2771 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| |||| ||| | ||| || || |||||||| || Sbjct 2770 TTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGAGTCTTC 2711 Query 132110 ATGAAAATCTGCATGACTT 132128 | ||| |||||||| |||| Sbjct 2710 ACGAAGATCTGCAT-ACTT 2693 >seq7695 Length=5764 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 5729 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 5670 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 5669 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 5610 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || |||| | || | | || | ||||||||| |||| Sbjct 5609 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCACGTCGAG 5550 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || ||||| ||||| || || | |||||||||||| Sbjct 5549 CGTGATGGTCTTACCCGTCAGCGTCTTGACGAAAATCTGCAT 5508 >seq51638 Length=8654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || || ||||| || |||| Sbjct 8441 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 8500 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || ||| || || |||| Sbjct 8501 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 8560 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| |||| ||| | || || || ||||| || || Sbjct 8561 TTGTCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTG 8620 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 8621 ACGAAGATCTGCATG 8635 >seq10229 Length=4391 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || || ||||| || |||| Sbjct 2720 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 2661 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || ||| || || |||| Sbjct 2660 AAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACG 2601 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | |||||| || |||| ||| | || || || |||| || || Sbjct 2600 TTGTCGATCGAGTCCGACGGCTCTACGTCGAGCGTGATGGTCTTGCCCGTCAACGTCTTG 2541 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 2540 ACGAAAATCTGCAT 2527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476180271983520