Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq64538 105 6e-18 seq57003 100 3e-16 seq29366 100 3e-16 seq50704 91.5 1e-13 >seq64538 Length=4600 Score = 105 bits (116), Expect = 6e-18 Identities = 133/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 |||| ||||||||||||||||||||| || || || |||| ||| ||||| Sbjct 3180 CTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGTTTGACGGGGAAGTCCTC--GGCCGCG 3123 Query 5400 --GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||| || | ||| |||| ||| || ||| |||| | ||| | ||||| || ||| Sbjct 3122 TGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCC 3063 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCG 5517 || | ||| || || | |||||| ||||| | |||||||||||| ||||||||||| Sbjct 3062 GTGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCGGCGCCACGCGCGCGTAGCAGCCG 3003 Query 5518 T 5518 | Sbjct 3002 T 3002 >seq57003 Length=3684 Score = 100 bits (110), Expect = 3e-16 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 |||| ||||||||||||||||||||| || || || |||| ||| ||||| Sbjct 504 CTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGTTTGACGGGGAAGTCCTC--GGCCGCG 561 Query 5400 --GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||| || | ||| |||| ||| || ||| |||| | ||| | ||||| || ||| Sbjct 562 TGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCC 621 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCG 5517 || | ||| || || | |||||| ||||| | |||||||||||| ||||||| ||| Sbjct 622 GTGTCGATGAACTTCTTGAGCGCGAGCCCGGAGCGCGGCGCCACGCGCGCGTAGCATCCG 681 Query 5518 T 5518 | Sbjct 682 T 682 >seq29366 Length=1830 Score = 100 bits (110), Expect = 3e-16 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 |||| ||||||||||||||||||||| || || || |||| ||| ||||| Sbjct 905 CTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGTTTGACGGGGAAGTCCTC--GGCCGCG 848 Query 5400 --GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||| || | ||| |||| ||| || ||| |||| | ||| | ||||| || ||| Sbjct 847 TGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCC 788 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCG 5517 || | ||| || || | |||||| ||||| | |||||||||||| ||||||| ||| Sbjct 787 GTGTCGATGAACTTCTTGAGCGCGAGCCCGGAGCGCGGCGCCACGCGCGCGTAGCATCCG 728 Query 5518 T 5518 | Sbjct 727 T 727 >seq50704 Length=6601 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 |||| ||||||||||||||||||||| || || || |||| ||| ||||| Sbjct 3172 CTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGTTTGACGGGGAAGTCCTC--GGCCGCG 3115 Query 5400 --GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||| || | ||| |||| ||| || ||| |||| | ||| | ||||| || ||| Sbjct 3114 TGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCC 3055 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTAGCAGCCG 5517 || | ||| || || | || || ||||| | |||||||||||| ||||||| ||| Sbjct 3054 GTGTCGATGAACTTCTTGAGTGCAAGTCCGGAGCGCGGCGCCACGCGCGCGTAGCATCCG 2995 Query 5518 T 5518 | Sbjct 2994 T 2994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447406311503520