Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq71182 286 4e-72 seq53744 271 9e-68 >seq71182 Length=8880 Score = 286 bits (316), Expect = 4e-72 Identities = 463/652 (71%), Gaps = 13/652 (2%) Strand=Plus/Minus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||| ||||||||||| || ||||| || || || | ||| ||||| || || Sbjct 2797 AGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 2738 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTT 147038 ||||| || || |||| || || | || || | || |||| || ||||||||| || || Sbjct 2737 GGCTTCAGTCCACTCACCTGTGCTATCA-GTCGCGTAAGCAACGCGTAGCTGGCGATATT 2679 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 ||| || || || || |||||||| |||| | |||||||| |||||| || | ||| || Sbjct 2678 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCC 2619 Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||||||||||| |||||||| | |||||||||||||| |||||||| | || || Sbjct 2618 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 2559 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTT 147217 ||| || ||||| ||||| | ||| | ||| | | | || || ||| | | || | Sbjct 2558 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGATTCGTGCGCAGCTTGT 2500 Query 147218 CGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACG 147276 |||||| | |||||||||||||||||||| |||| | | | ||| |||| | Sbjct 2499 GAATAACCTCGGTGAGCTGGTCCACGCCCTGGCCAGTGTAG-TCGGCGTGCATGTCCGTG 2441 Query 147277 TACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTT 147336 ||| ||||||||||||| | ||||||||||||||| || || || |||||||| ||| Sbjct 2440 TACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCC-AACTTC 2382 Query 147337 CTGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 | | | | || || | | | ||| |||| | ||||| | | ||||||||||| Sbjct 2381 CCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCCATTGCCGTCCCAGATGTG 2322 Query 147396 CA-CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCT 147454 | ||| | || | ||| | | |||| || | ||||||||| ||||||| Sbjct 2321 GATGTCCTTCTGCTG-CAGCGTGTGCGCACTCGTGTCTCCACTGATGAACCACAGCAGCT 2263 Query 147455 CCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCC 147511 ||||| || || | ||| ||||| | |||||| || |||| |||||| | ||||| Sbjct 2262 CCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAACGGGAACACGTTGTCCC 2203 Query 147512 TCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGT 147563 |||| ||| | ||| | || || || |||||||| ||||| ||||| Sbjct 2202 TCAGACTGAACCGCATCTGCGCTCCGAAGACCGACAGCGTCCCCGTTCCCGT 2151 >seq53744 Length=11616 Score = 271 bits (300), Expect = 9e-68 Identities = 462/654 (71%), Gaps = 17/654 (3%) Strand=Plus/Minus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||| |||||||| || || ||||| || || || | || ||||| || || Sbjct 2797 AGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACATGGACAAACTCGCCA 2738 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTT 147038 ||||| || || |||| || || |||| || | || |||| || ||||||||| || || Sbjct 2737 GGCTTCAGCCCACTCACCTGCGCTACCA-GTCGCGTAAGCAACGCGTAGCTGGCGATATT 2679 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 ||| || || || || |||||||| |||| | |||||||| ||||| || | ||| || Sbjct 2678 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATTTGGCAGGACAACTCGCC 2619 Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||||||||||| || || || | |||||||||||||| |||||||| | || || Sbjct 2618 GTCGGCCACGTAGAATTGACAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 2559 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTT 147217 ||| || ||||| ||||| | ||| | ||| | | | || || ||| | | || | Sbjct 2558 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCAGTC-GGATTCGTGCGCAGCTTGT 2500 Query 147218 CGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACG 147276 ||||||| ||||||||||||||||| || |||| | | | ||| |||| | Sbjct 2499 GGATAACCTCGGCGAGCTGGTCCACGCCCTGACCAGTGTAG-TCGGCATGCATGTCCGTG 2441 Query 147277 TACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTT 147336 ||| |||||||||| || | ||||||||||||||| || ||||| |||||||| || Sbjct 2440 TACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGCCCGAGGTCGCC--AACTT 2383 Query 147337 CTGTGCGA--GAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATG 147393 || |||| | || || | | | ||| |||| | ||||||| | ||||||||||| Sbjct 2382 CT-CGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCCGTTGCCGTCCCAGATG 2324 Query 147394 CCCA-CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAG 147452 | ||| | || | ||| | | |||| ||| | ||||||||| ||||| Sbjct 2323 TGGATATCCTTCTGCTG-CAGCGTGTGCGCACTCGTGTCGCCACTGATGAACCACAGCAG 2265 Query 147453 CTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTC 147509 ||||||| || || | ||||||||| | |||||| || |||| |||||| | ||| Sbjct 2264 CTCCTCCGCCACGCCACGCCAAAAGACGCGCTTGGTCGTGAGCAACGGGAACACATTGTC 2205 Query 147510 CCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGT 147563 |||||| | | | ||| | || || || |||||||| ||||| ||||| Sbjct 2204 CCTCAGACTGAAGCGCATCTGCGCTCCGAAGACCGACAGCGTCCCCGTTCCCGT 2151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582960439324800