Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq66235 89.7 2e-12 seq26165 89.7 2e-12 seq5951 89.7 2e-12 >seq66235 Length=2726 Score = 89.7 bits (98), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 443763 CTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACT 443822 ||||||||||||| |||| ||||| || || |||| || |||| ||| ||||| || Sbjct 615 CTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCT 556 Query 443823 GATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACAT 443882 |||||| || |||||||| |||| |||||||| || || | ||| |||| | | Sbjct 555 GATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCCAAGC---T 499 Query 443883 CGTGCACAAGCTGCC 443897 ||| |||||||||| Sbjct 498 GGTGAACAAGCTGCC 484 >seq26165 Length=1295 Score = 89.7 bits (98), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 443763 CTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACT 443822 ||||||||||||| |||| ||||| || || |||| || |||| ||| ||||| || Sbjct 79 CTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCT 138 Query 443823 GATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACAT 443882 |||||| || |||||||| |||| |||||||| || || | ||| |||| | | Sbjct 139 GATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCCAAGC---T 195 Query 443883 CGTGCACAAGCTGCC 443897 ||| |||||||||| Sbjct 196 GGTGAACAAGCTGCC 210 >seq5951 Length=1254 Score = 89.7 bits (98), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 443763 CTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACT 443822 ||||||||||||| |||| ||||| || || |||| || |||| ||| ||||| || Sbjct 1176 CTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCT 1117 Query 443823 GATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACAT 443882 |||||| || |||||||| |||| |||||||| || || | ||| |||| | | Sbjct 1116 GATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCCAAGC---T 1060 Query 443883 CGTGCACAAGCTGCC 443897 ||| |||||||||| Sbjct 1059 GGTGAACAAGCTGCC 1045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1586864003655740