Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq66235 114 2e-20 seq36642 102 1e-16 seq62087 98.7 1e-15 seq36643 98.7 1e-15 seq26165 95.1 2e-14 seq5951 95.1 2e-14 >seq66235 Length=2726 Score = 114 bits (126), Expect = 2e-20 Identities = 378/576 (66%), Gaps = 14/576 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 232 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 291 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||| |||| | || | ||| |||| | || || ||||| Sbjct 292 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTAC-AGCAGACG 350 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-AC 122548 || | ||| |||| ||||||| | |||| | | || ||||| ||||| || | || Sbjct 351 GTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCAC 410 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | ||||| | ||| | |||| | | ||| ||| ||||| || |||||| ||| Sbjct 411 A-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGT 469 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 | | | ||| || || | | || | | | ||| |||| | || Sbjct 470 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAGG--CACG-CGAAG 525 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 ||| ||| | ||||| || ||| || || || || ||||||| || || |||||| Sbjct 526 TCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATG 585 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 || || |||||||||| ||| | || | |||||| || || ||||||||||| |||||| Sbjct 586 AGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCC 645 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT-TTGCATCAAACCATTT 122843 || || ||||| | ||||| || | | | || ||| ||| | || |||| || Sbjct 646 ACGGCTGCGAACGCCAGCAGGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTT 704 Query 122844 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTG 122903 | ||||| | ||| ||||||| | ||| || | || | |||||| | || || Sbjct 705 GAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCGCGCAGCAAGTG 764 Query 122904 CTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 | ||| || | ||||||| ||||| ||||||| Sbjct 765 GTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 800 >seq36642 Length=3786 Score = 102 bits (112), Expect = 1e-16 Identities = 242/359 (67%), Gaps = 10/359 (3%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 ||||||| || ||||| ||| | || || || || |||||||| | | | || ||||| Sbjct 1109 AACCCGTTCCAATACCATCGCTGCCGTTGACAAGTACCATTGGGATAATCGGGATGTACC 1168 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 | || || ||||| || | || || ||||||||||| | ||| | || || ||| Sbjct 1169 ATTCCGGCTCAATTGATTGACCGTCTTCGTCCAAGTATTCGAGCACGTCGTTGTCAAGAG 1228 Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGT--AAGTTTTGTGAAGATATACCTCGTTTGAGA 181801 ||||| ||||| ||||| ||| | ||| || ||||| ||||| | | | Sbjct 1229 GATCATAGATCCGGCGAG-TGAGTTGTTCCAAG-TTGGTGAAAATATAACGAGCGCTGGC 1286 Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 || || || || ||||| | |||||||||||| ||||| |||| || |||| || Sbjct 1287 TGCATCCTTGCCGCCCATCAAACGCGTACCAAACTGACCGATTGGCGACAGGAGGTGGAT 1346 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCC-GCAAGGGACACT- 181919 |||||| || | |||| | |||| || ||||| || |||| || | Sbjct 1347 GTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTGACGATACAGCCCTGCAA---ACTTTG 1403 Query 181920 -TCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977 || ||||||||||| || || | || | ||||| | |||| ||||||||||||| Sbjct 1404 CTCGCCGTGGTGGTATGCGGAGTGCTCTGACACATAGCCAGCCAGTTGTGCCACCTTCA 1462 >seq62087 Length=11983 Score = 98.7 bits (108), Expect = 1e-15 Identities = 241/359 (67%), Gaps = 10/359 (3%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 ||||||| || ||||| || | || || || || |||||||| | | | || ||||| Sbjct 7346 AACCCGTTCCAATACCGTCACTGCCGTTGACAAGTACCATTGGGATAATCGGGATGTACC 7405 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 | || || || || || | || || ||||||||||| | ||| | || || ||| Sbjct 7406 ATTCCGGCTCGATCGATTGACCGTCTTCGTCCAAGTATTCGAGCACGTCGTTGTCAAGAG 7465 Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGT--AAGTTTTGTGAAGATATACCTCGTTTGAGA 181801 ||||| ||||| ||||| ||| | ||| || ||||| ||||| | | | Sbjct 7466 GATCATAGATCCGGCGAG-TGAGTTGTTCCAAG-TTGGTGAAAATATAACGAGCGCTGGC 7523 Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 || || || || ||||| | |||||||||||| ||||| |||| || |||| || Sbjct 7524 TGCATCCTTGCCGCCCATCAAACGCGTACCAAACTGACCGATTGGCGACAGGAGGTGGAT 7583 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCC-GCAAGGGACACT- 181919 |||||| || | |||| | |||| || ||||| || |||| || || Sbjct 7584 GTTGTTGCTTCCAACAAAGTCTTGAGCCATGTTGACGATACAGCCCTGCAA---ACTCTG 7640 Query 181920 -TCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977 || ||||| ||||| || || | || | ||||| | ||||| ||||||||||||| Sbjct 7641 CTCGCCGTGATGGTACGCGGAGTGCTCTGACACATAACCAGCCAATTGTGCCACCTTCA 7699 >seq36643 Length=1775 Score = 98.7 bits (108), Expect = 1e-15 Identities = 241/359 (67%), Gaps = 10/359 (3%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 ||||||| || ||||| || | || || || || |||||||| | | | || ||||| Sbjct 1109 AACCCGTTCCAATACCGTCACTGCCGTTGACAAGTACCATTGGGATAATCGGGATGTACC 1168 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 | || || || || || | || || ||||||||||| | ||| | || || ||| Sbjct 1169 ATTCCGGCTCGATCGATTGACCGTCTTCGTCCAAGTATTCGAGCACGTCGTTGTCAAGAG 1228 Query 181744 GATCAAAGATCTTGCGAGCCTCCTTGGT--AAGTTTTGTGAAGATATACCTCGTTTGAGA 181801 ||||| ||||| ||||| ||| | ||| || ||||| ||||| | | | Sbjct 1229 GATCATAGATCCGGCGAG-TGAGTTGTTCCAAG-TTGGTGAAAATATAACGAGCGCTGGC 1286 Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAAT 181861 || || || || ||||| | |||||||||||| ||||| |||| || |||| || Sbjct 1287 TGCATCCTTGCCGCCCATCAAACGCGTACCAAACTGACCGATTGGCGACAGGAGGTGGAT 1346 Query 181862 GTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCC-GCAAGGGACACT- 181919 |||||| || | |||| | |||| || ||||| || |||| || || Sbjct 1347 GTTGTTGCTTCCAACAAAGTCTTGAGCCATGTTGACGATACAGCCCTGCAA---ACTCTG 1403 Query 181920 -TCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977 || ||||| ||||| || || | || | ||||| | ||||| ||||||||||||| Sbjct 1404 CTCGCCGTGATGGTACGCGGAGTGCTCTGACACATAACCAGCCAATTGTGCCACCTTCA 1462 >seq26165 Length=1295 Score = 95.1 bits (104), Expect = 2e-14 Identities = 294/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 462 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 403 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||| |||| | || | ||| |||| | || || ||||| Sbjct 402 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTAC-AGCAGACG 344 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-AC 122548 || | ||| |||| ||||||| | |||| | | || ||||| ||||| || | || Sbjct 343 GTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCAC 284 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | ||||| | ||| | |||| | | ||| ||| ||||| || |||||| ||| Sbjct 283 A-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGT 225 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 | | | ||| || || | | || | | | ||| |||| | || Sbjct 224 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAGG--CACG-CGAAG 169 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 ||| ||| | ||||| || ||| || || || || ||||||| || || |||||| Sbjct 168 TCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATG 109 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 || || |||||||||| ||| | || | |||||| || || ||||||||||| |||||| Sbjct 108 AGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCC 49 Query 122785 ACACACGCAAACGCAAAAAGGCGTTC 122810 || || ||||| | ||||| || Sbjct 48 ACGGCTGCGAACGCCAGCAGGCGCTC 23 >seq5951 Length=1254 Score = 95.1 bits (104), Expect = 2e-14 Identities = 294/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| || ||||||||||| || | || || | ||||| Sbjct 793 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 852 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||| |||| | || | ||| |||| | || || ||||| Sbjct 853 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTAC-AGCAGACG 911 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-AC 122548 || | ||| |||| ||||||| | |||| | | || ||||| ||||| || | || Sbjct 912 GTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCAC 971 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | ||||| | ||| | |||| | | ||| ||| ||||| || |||||| ||| Sbjct 972 A-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGT 1030 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 | | | ||| || || | | || | | | ||| |||| | || Sbjct 1031 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAGG--CACG-CGAAG 1086 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 ||| ||| | ||||| || ||| || || || || ||||||| || || |||||| Sbjct 1087 TCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATG 1146 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 || || |||||||||| ||| | || | |||||| || || ||||||||||| |||||| Sbjct 1147 AGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCC 1206 Query 122785 ACACACGCAAACGCAAAAAGGCGTTC 122810 || || ||||| | ||||| || Sbjct 1207 ACGGCTGCGAACGCCAGCAGGCGCTC 1232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627464164867200