Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq66235 174 2e-38 seq26165 150 2e-31 seq5951 150 2e-31 >seq66235 Length=2726 Score = 174 bits (192), Expect = 2e-38 Identities = 396/584 (68%), Gaps = 24/584 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | || ||| | ||||| Sbjct 232 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 291 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || ||||||||| ||| | || | ||| || | | | || ||||| Sbjct 292 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGG 351 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||| ||||||| |||| | | || ||||| ||||| || | ||| Sbjct 352 TCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCACA 411 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | |||| | | ||| || ||| || || |||||||| |||| Sbjct 412 -GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGTG 470 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 | | | ||| | ||| | || || |||| |||| | |||| | | Sbjct 471 CACGCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAGGCACG-CGA 523 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | |||||||||||| ||| || || |||||||||| ||| || |||| Sbjct 524 AGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCA 583 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || |||||||||| |||||| || | || || ||||| ||||||||||| |||| Sbjct 584 TGAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 643 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT-TTGTATCAAACCAC 130198 |||| |||||||| | || ||||| | | || || ||| | || ||||| Sbjct 644 CCACGGCTGCGAACGCCAGCAGGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCAC 702 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTCA--AAG 130255 || | |||||| ||||| || |||| | |||||||| || | ||| || || ||| Sbjct 703 TTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCGCGCAGCAAG 762 Query 130256 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 | |||||| || | | ||| ||||||||| | || ||||| Sbjct 763 TGGTCCTTC---TCCGTCGCATCCTTGATGTACGTGTCAATGAG 803 >seq26165 Length=1295 Score = 150 bits (166), Expect = 2e-31 Identities = 306/448 (68%), Gaps = 16/448 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | || ||| | ||||| Sbjct 462 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 403 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || ||||||||| ||| | || | ||| || | | | || ||||| Sbjct 402 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGG 343 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||| ||||||| |||| | | || ||||| ||||| || | ||| Sbjct 342 TCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCACA 283 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | |||| | | ||| || ||| || || |||||||| |||| Sbjct 282 -GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGTG 224 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 | | | ||| | ||| | || || |||| |||| | |||| | | Sbjct 223 CACGCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAGGCACG-CGA 171 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | |||||||||||| ||| || || |||||||||| ||| || |||| Sbjct 170 AGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCA 111 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || |||||||||| |||||| || | || || ||||| ||||||||||| |||| Sbjct 110 TGAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 51 Query 130140 CCACACACGCGAACGCAAAGAGACGCTC 130167 |||| |||||||| | || ||||| Sbjct 50 CCACGGCTGCGAACGCCAGCAGGCGCTC 23 >seq5951 Length=1254 Score = 150 bits (166), Expect = 2e-31 Identities = 306/448 (68%), Gaps = 16/448 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | || ||| | ||||| Sbjct 793 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 852 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || ||||||||| ||| | || | ||| || | | | || ||||| Sbjct 853 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGG 912 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||| ||||||| |||| | | || ||||| ||||| || | ||| Sbjct 913 TCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAATTCATGCCGATCAGCTCCACA 972 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | |||| | | ||| || ||| || || |||||||| |||| Sbjct 973 -GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGTG 1031 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 | | | ||| | ||| | || || |||| |||| | |||| | | Sbjct 1032 CACGCGGCTCTCCGGCAGCT----TGTTCACCAGCTTG--GAGTACATGAGGCACG-CGA 1084 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | |||||||||||| ||| || || |||||||||| ||| || |||| Sbjct 1085 AGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCA 1144 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || |||||||||| |||||| || | || || ||||| ||||||||||| |||| Sbjct 1145 TGAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 1204 Query 130140 CCACACACGCGAACGCAAAGAGACGCTC 130167 |||| |||||||| | || ||||| Sbjct 1205 CCACGGCTGCGAACGCCAGCAGGCGCTC 1232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617876041813920