Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq56688 172 6e-38 seq42745 172 6e-38 seq42744 172 6e-38 seq41581 172 6e-38 seq66235 120 4e-22 seq26165 100 3e-16 seq5951 100 3e-16 >seq56688 Length=2816 Score = 172 bits (190), Expect = 6e-38 Identities = 425/634 (67%), Gaps = 17/634 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | ||||||||||| | || || || | |||||| ||| | Sbjct 2189 CCGCAGCAAATGATTATGCGCGTGGCGCTTGGCATCCACAAGAGCAACATTGCGGCTGCC 2130 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCA----ACACCAACCCT 104337 ||||||| ||||| ||||| ||| ||||| |||||||| || || || || Sbjct 2129 CTGGAGACGTACGAGCTCATGTCGCAA---ATGTTT-TTCACGCATGCCACCCCGACACT 2074 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 || || || || || || | || ||| |||| |||||||| | |||| | || Sbjct 2073 TTTTAACGCCGGCACGCCGCGCCCTCAACTGTCGTCGTGCTTCCTATTGGCCATGCAAGA 2014 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 |||||||| | || || || | || | | | ||||||| ||||| || ||||| Sbjct 2013 CGACTCAATTGAAGGCATTTACGACACGTTAAAGCAGTGTGCCTGTATCTCTAAATGGGC 1954 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || || || | | |||||| || | || || || || | Sbjct 1953 CGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACGAACAGCTAC-ATCCGAGGCA 1895 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || || |||| || || || ||||| || || ||||||| ||| ||||| | Sbjct 1894 CGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGT 1835 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | || | || | || | || ||||| || |||| |||| | ||||| |||| Sbjct 1834 ACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTACTTGGAGCCTTGGC 1775 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| | | |||||| | || | ||| ||||| ||| ||||| | | | | Sbjct 1774 ACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGTAACGAGTTG-CACCGC 1716 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || || || |||| ||| || ||| | || ||||| ||||||||||| || || | Sbjct 1715 GCTCGTGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCC 1656 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | |||||| ||| ||| ||||| || || |||| ||||| |||| || ||| | ||| Sbjct 1655 AATGGCAAGTGGAGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGG 1597 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 || || || || ||||| || |||||||||| Sbjct 1596 CGACGAATTCGAGGCCCTCTATGAAAAGTACGAG 1563 >seq42745 Length=3754 Score = 172 bits (190), Expect = 6e-38 Identities = 425/634 (67%), Gaps = 17/634 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | ||||||||||| | || || || | |||||| ||| | Sbjct 2571 CCGCAGCAAATGATTATGCGCGTGGCGCTTGGCATCCACAAGAGCAACATTGCGGCTGCC 2630 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCA----ACACCAACCCT 104337 ||||||| ||||| ||||| ||| ||||| |||||||| || || || || Sbjct 2631 CTGGAGACGTACGAGCTCATGTCGCAA---ATGTTT-TTCACGCATGCCACCCCGACACT 2686 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 || || || || || || | || ||| |||| |||||||| | |||| | || Sbjct 2687 TTTTAACGCCGGCACGCCGCGCCCTCAACTGTCGTCGTGCTTCCTATTGGCCATGCAAGA 2746 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 |||||||| | || || || | || | | | ||||||| ||||| || ||||| Sbjct 2747 CGACTCAATTGAAGGCATTTACGACACGTTAAAGCAGTGTGCCTGTATCTCTAAATGGGC 2806 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || || || | | |||||| || | || || || || | Sbjct 2807 CGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACGAACAGCTAC-ATCCGAGGCA 2865 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || || |||| || || || ||||| || || ||||||| ||| ||||| | Sbjct 2866 CGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGT 2925 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | || | || | || | || ||||| || |||| |||| | ||||| |||| Sbjct 2926 ACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTACTTGGAGCCTTGGC 2985 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| | | |||||| | || | ||| ||||| ||| ||||| | | | | Sbjct 2986 ACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGTAACGAGTTG-CACCGC 3044 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || || || |||| ||| || ||| | || ||||| ||||||||||| || || | Sbjct 3045 GCTCGTGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCC 3104 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | |||||| ||| ||| ||||| || || |||| ||||| |||| || ||| | ||| Sbjct 3105 AATGGCAAGTGGAGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGG 3163 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 || || || || ||||| || |||||||||| Sbjct 3164 CGACGAATTCGAGGCCCTCTATGAAAAGTACGAG 3197 >seq42744 Length=3619 Score = 172 bits (190), Expect = 6e-38 Identities = 425/634 (67%), Gaps = 17/634 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | ||||||||||| | || || || | |||||| ||| | Sbjct 2436 CCGCAGCAAATGATTATGCGCGTGGCGCTTGGCATCCACAAGAGCAACATTGCGGCTGCC 2495 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCA----ACACCAACCCT 104337 ||||||| ||||| ||||| ||| ||||| |||||||| || || || || Sbjct 2496 CTGGAGACGTACGAGCTCATGTCGCAA---ATGTTT-TTCACGCATGCCACCCCGACACT 2551 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 || || || || || || | || ||| |||| |||||||| | |||| | || Sbjct 2552 TTTTAACGCCGGCACGCCGCGCCCTCAACTGTCGTCGTGCTTCCTATTGGCCATGCAAGA 2611 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 |||||||| | || || || | || | | | ||||||| ||||| || ||||| Sbjct 2612 CGACTCAATTGAAGGCATTTACGACACGTTAAAGCAGTGTGCCTGTATCTCTAAATGGGC 2671 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || || || | | |||||| || | || || || || | Sbjct 2672 CGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACGAACAGCTAC-ATCCGAGGCA 2730 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || || |||| || || || ||||| || || ||||||| ||| ||||| | Sbjct 2731 CGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGT 2790 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | || | || | || | || ||||| || |||| |||| | ||||| |||| Sbjct 2791 ACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTACTTGGAGCCTTGGC 2850 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| | | |||||| | || | ||| ||||| ||| ||||| | | | | Sbjct 2851 ACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGTAACGAGTTG-CACCGC 2909 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || || || |||| ||| || ||| | || ||||| ||||||||||| || || | Sbjct 2910 GCTCGTGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCC 2969 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | |||||| ||| ||| ||||| || || |||| ||||| |||| || ||| | ||| Sbjct 2970 AATGGCAAGTGGAGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGG 3028 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 || || || || ||||| || |||||||||| Sbjct 3029 CGACGAATTCGAGGCCCTCTATGAAAAGTACGAG 3062 >seq41581 Length=4797 Score = 172 bits (190), Expect = 6e-38 Identities = 425/634 (67%), Gaps = 17/634 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | ||||||||||| | || || || | |||||| ||| | Sbjct 628 CCGCAGCAAATGATTATGCGCGTGGCGCTTGGCATCCACAAGAGCAACATTGCGGCTGCC 687 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCA----ACACCAACCCT 104337 ||||||| ||||| ||||| ||| ||||| |||||||| || || || || Sbjct 688 CTGGAGACGTACGAGCTCATGTCGCAA---ATGTTT-TTCACGCATGCCACCCCGACACT 743 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 || || || || || || | || ||| |||| |||||||| | |||| | || Sbjct 744 TTTTAACGCCGGCACGCCGCGCCCTCAACTGTCGTCGTGCTTCCTATTGGCCATGCAAGA 803 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 |||||||| | || || || | || | | | ||||||| ||||| || ||||| Sbjct 804 CGACTCAATTGAAGGCATTTACGACACGTTAAAGCAGTGTGCCTGTATCTCTAAATGGGC 863 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || || || | | |||||| || | || || || || | Sbjct 864 CGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACGAACAGCTAC-ATCCGAGGCA 922 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || || || |||| || || || ||||| || || ||||||| ||| ||||| | Sbjct 923 CGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGT 982 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | || | || | || | || ||||| || |||| |||| | ||||| |||| Sbjct 983 ACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTACTTGGAGCCTTGGC 1042 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| | | |||||| | || | ||| ||||| ||| ||||| | | | | Sbjct 1043 ACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGTAACGAGTTG-CACCGC 1101 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || || || |||| ||| || ||| | || ||||| ||||||||||| || || | Sbjct 1102 GCTCGTGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCC 1161 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | |||||| ||| ||| ||||| || || |||| ||||| |||| || ||| | ||| Sbjct 1162 AATGGCAAGTGGAGTCTGTTTTGCCCTAACGAGGCCCCTGGACTCTATGAGTGCTG-GGG 1220 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG 104845 || || || || ||||| || |||||||||| Sbjct 1221 CGACGAATTCGAGGCCCTCTATGAAAAGTACGAG 1254 >seq66235 Length=2726 Score = 120 bits (132), Expect = 4e-22 Identities = 190/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||||| | |||||| | || | | |||||| | Sbjct 803 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACTTGCTGCGCGCCATCGAT 744 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 94788 || | |||||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 743 ACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 684 Query 94789 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| ||| || | ||||| || | || || || || ||||| ||||||||||| Sbjct 683 TCGTCGTACC----CGGAGCGCCTGCTGGCGTTCGCAGCCGTGGAGGGCATCTTCTTCTC 628 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || || |||||| | || | ||||| |||||||| || |||||||| || || |||| Sbjct 627 GGGCTCGTTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 568 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| ||||||||||| Sbjct 567 CTCGAACGAGCTGATCAGCCGTGACGAGGG 538 >seq26165 Length=1295 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||| || || |||||| | || | ||||| |||||||| || Sbjct 47 GTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGC 106 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| || || ||||||| |||||||| ||| ||||||||||| Sbjct 107 CTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGG 156 >seq5951 Length=1254 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||| || || |||||| | || | ||||| |||||||| || Sbjct 1208 GTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGC 1149 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||||||| || || ||||||| |||||||| ||| ||||||||||| Sbjct 1148 CTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGG 1099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582733444747680