Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq71182 176 4e-39 seq53744 176 4e-39 seq64538 102 7e-17 seq57003 93.3 3e-14 seq29366 93.3 3e-14 >seq71182 Length=8880 Score = 176 bits (194), Expect = 4e-39 Identities = 413/618 (67%), Gaps = 24/618 (4%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || |||| | || || ||||| || || || | |||| Sbjct 2809 AGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGG 2750 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 2749 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 2690 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 |||||||| || || || || || || |||||||| |||| | |||||| | ||| || Sbjct 2689 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 2630 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | |||||||||| |||||| ||||| || | ||||||||| || || ||||| Sbjct 2629 GACAACTCTCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 2571 Query 30104 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 30158 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 2570 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 2514 Query 30159 TGTTC----CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30213 || | || || | || ||| | ||||| ||||| ||| || | ||| Sbjct 2513 CGTGCGCAGCTTGTGAATAACCTCGGTG------AGCTGGTCCACGCCCTGGCCAGTGTA 2460 Query 30214 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 ||| || |||||||||||||| || || || || | ||||||||| ||||| ||||| Sbjct 2459 GTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGG 2400 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333 ||| ||||| || |||||| || | || | |||||| | | || | || || Sbjct 2399 TCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCC 2340 Query 30334 GTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 ||| |||||||||| | | |||||| ||| | | | ||| || || Sbjct 2339 ATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACT 2280 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 || ||||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | Sbjct 2279 GATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAA 2220 Query 30454 GGGAAAC----TGTCCCT 30467 || ||| ||||||| Sbjct 2219 CGGGAACACGTTGTCCCT 2202 >seq53744 Length=11616 Score = 176 bits (194), Expect = 4e-39 Identities = 413/618 (67%), Gaps = 24/618 (4%) Strand=Plus/Minus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || |||| | ||| || ||||| || || || | ||| Sbjct 2809 AGCTGCTTCTGGAGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACATGG 2750 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || || | ||||| | || || || | || ||| || | | |||| Sbjct 2749 ACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTACCAGTCGCGTAAGCAACGCGTAG 2690 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 |||||||| || || || || || || |||||||| |||| | |||||| | || || Sbjct 2689 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATTTGGCAG 2630 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | ||| |||||| |||||| || ||||| | ||||||||| || || ||||| Sbjct 2629 GACAACTCGCCGTCGGCCACGTAGAATTGACAGAACATGTGGCACGGCGGGAGCGCCAT- 2571 Query 30104 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 30158 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 2570 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCAGTCGGATT 2514 Query 30159 TGT-----TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30213 || | || || || ||||| ||||| ||||| ||| || | ||| Sbjct 2513 CGTGCGCAGCTTGTGGATAACCTCGGCG------AGCTGGTCCACGCCCTGACCAGTGTA 2460 Query 30214 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 ||| || |||||||||||||| || || ||||| | ||||||||| ||||| ||||| Sbjct 2459 GTCGGCATGCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGG 2400 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333 || ||||| || |||| | || | || | |||||| | | || | || || Sbjct 2399 CCCGAGGTCGCCAACTTCTCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCC 2340 Query 30334 GTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 |||| |||||||||| | | |||||| ||| | | | ||| || || Sbjct 2339 GTTGCCGTCCCAGATGTGGATATCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCGCCACT 2280 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GA 30452 || ||||||||||||||||||| | ||| | ||||||||| | |||||||||||| | Sbjct 2279 GATGAACCACAGCAGCTCCTCCGCCACGCCACGCCAAAAGACGCGCTTGGTCGTGAGCAA 2220 Query 30453 GGGGAA---ACTGTCCCT 30467 ||||| | ||||||| Sbjct 2219 CGGGAACACATTGTCCCT 2202 >seq64538 Length=4600 Score = 102 bits (112), Expect = 7e-17 Identities = 206/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 49034 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 49093 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 3213 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 3154 Query 49094 GCCCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 49153 || | | ||| | ||| ||| | | ||| ||||| || ||||| | |||||| Sbjct 3153 TCCGCGTTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 3094 Query 49154 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 49213 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 3093 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 3034 Query 49214 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 49273 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 3033 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 2974 Query 49274 TACCAGGGCCCTGTCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 49333 || ||| || || || | ||||| |||| | || ||| |||| |||||| ||| Sbjct 2973 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCATCGTAAGCAGCCGACAGGTCCAGACC 2914 Query 49334 CGCGGC 49339 |||||| Sbjct 2913 CGCGGC 2908 >seq57003 Length=3684 Score = 93.3 bits (102), Expect = 3e-14 Identities = 204/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 49034 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 49093 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 471 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 530 Query 49094 GCCCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 49153 || | | ||| | ||| ||| | | ||| ||||| || ||||| | |||||| Sbjct 531 TCCGCGTTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 590 Query 49154 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 49213 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 591 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGCCC 650 Query 49214 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 49273 ||| | || ||||| | ||||| || ||| | | | ||||||||||||| Sbjct 651 GGAGCGCGGCGCCACGCGCGCGTAGCATCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 710 Query 49274 TACCAGGGCCCTGTCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 49333 || ||| || || || | ||||| ||| | || ||| |||| |||||| ||| Sbjct 711 GACGAGGCCCTTGCCGCCCGCGGGGATTACGGCATCGTAAGCAGCCGACAGGTCCAGACC 770 Query 49334 CGCGGC 49339 |||||| Sbjct 771 CGCGGC 776 >seq29366 Length=1830 Score = 93.3 bits (102), Expect = 3e-14 Identities = 204/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 49034 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 49093 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 938 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 879 Query 49094 GCCCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 49153 || | | ||| | ||| ||| | | ||| ||||| || ||||| | |||||| Sbjct 878 TCCGCGTTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 819 Query 49154 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 49213 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 818 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGCCC 759 Query 49214 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 49273 ||| | || ||||| | ||||| || ||| | | | ||||||||||||| Sbjct 758 GGAGCGCGGCGCCACGCGCGCGTAGCATCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 699 Query 49274 TACCAGGGCCCTGTCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 49333 || ||| || || || | ||||| ||| | || ||| |||| |||||| ||| Sbjct 698 GACGAGGCCCTTGCCGCCCGCGGGGATTACGGCATCGTAAGCAGCCGACAGGTCCAGACC 639 Query 49334 CGCGGC 49339 |||||| Sbjct 638 CGCGGC 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405952218590544