Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq62796 154 1e-32 seq7695 140 3e-28 seq62410 127 2e-24 seq51638 123 2e-23 seq10229 116 3e-21 >seq62796 Length=4303 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || |||||||| |||||| | || || || || ||||| ||||| Sbjct 2697 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTCG 2756 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| ||||| || || ||||| || ||||| || || || || Sbjct 2757 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 2816 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || ||| || || | ||| |||||| Sbjct 2817 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 2876 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || | || |||||| |||| |||||||| Sbjct 2877 ATTCAGAAGGAGTCGACGCTGCACCTTGTGTTGCGTCTGCGCGGTGGCAT 2926 Score = 98.7 bits (108), Expect = 9e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 27033 GAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGC 27092 || ||||| ||||| |||||||| || | ||||| ||||| || || ||||| || ||| Sbjct 3706 GACGTGGAGCCGTCGGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGC 3765 Query 27093 ATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACC 27152 || || ||||| || ||||| | || | ||| ||||| || | || ||| || || Sbjct 3766 ATCCCGCCCGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACG 3825 Query 27153 GTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 | ||| ||||||||||| ||||||||||| Sbjct 3826 CTGAGCGACTACAACATTCAGAAGGAGTCGAC 3857 >seq7695 Length=5764 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| ||||| Sbjct 5508 ATGCAGATTTTCGTCAAGACGCTGACGGGTAAGACCATCACGCTCGACGTGGAGCCGTCG 5567 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||| | || || || || ||||| ||||| || ||||| || ||||| || Sbjct 5568 GACTCGATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 5627 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | || | ||| |||||| Sbjct 5628 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 5687 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| ||||| |||| || ||||| Sbjct 5688 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGGCAT 5737 >seq62410 Length=6674 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || ||||| ||||| Sbjct 1856 CATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCGTC 1797 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| ||||| || || ||||| || ||||| || ||||| || Sbjct 1796 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 1737 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | || ||| || || | ||| || || Sbjct 1736 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTATAA 1677 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||| ||||||||||| Sbjct 1676 CATTCAGAAGGAGTCGAC 1659 >seq51638 Length=8654 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 8638 CGGCATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCC 8579 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| |||||||| || | || || || || ||||| ||||| || ||||| || || || Sbjct 8578 GTCTGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCTGA 8519 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||||||||| || |||| ||| | || | ||| || Sbjct 8518 CCAGCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 8459 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 |||||| || ||||||||||| Sbjct 8458 CAACATCCAGAAGGAGTCGAC 8438 >seq10229 Length=4391 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || || || ||||| Sbjct 2527 ATGCAGATTTTCGTCAAGACGTTGACGGGCAAGACCATCACGCTCGACGTAGAGCCGTCG 2586 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || || ||||| ||||| || ||||| || ||||| || Sbjct 2587 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 2646 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | || | ||| |||||| Sbjct 2647 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 2706 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 2707 ATCCAGAAGGAGTCGAC 2723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434525168528640