Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq50881 145 4e-30 seq67281 123 1e-23 >seq50881 Length=8092 Score = 145 bits (160), Expect = 4e-30 Identities = 331/495 (67%), Gaps = 5/495 (1%) Strand=Plus/Minus Query 66243 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 66302 |||| ||||||||| ||||| || | ||| | | ||||||||||| || ||||| ||| Sbjct 3968 GCCTTCATCGACGCAGAGCATGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGAC 3909 Query 66303 CTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66362 | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 3908 ATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGAT 3849 Query 66363 CTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTG 66422 ||| ||| ||| || | || | |||| || | ||| |||||| || |||||| Sbjct 3848 ACGCTCATCAGGTCGGGAGCCGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGTG 3789 Query 66423 CCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTC 66482 ||||| || ||||| || || || || || ||| || | | ||||| ||||| ||| Sbjct 3788 CCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACTC 3729 Query 66483 ATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC-ACGCTGACGCT 66541 ||| ||||| |||| |||||||| || | | |||| ||||| | || | | Sbjct 3728 ATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTAT 3670 Query 66542 CTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCAC 66601 || | |||||| | || ||||| | || | | | || ||| | ||| || Sbjct 3669 CTTCCTGAACCAGATTCGTCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGTTAC 3613 Query 66602 CACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGC 66661 |||| |||| || || | | |||||| || || | |||| | ||||||| | Sbjct 3612 GTCGGGTGGCACAGCGCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAAGAC 3553 Query 66662 CACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAA 66721 || ||||| ||||| ||| |||||||||| || ||||||||| | ||||| Sbjct 3552 GGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCGAAGAA 3493 Query 66722 CAAGCTGGCCCCGCC 66736 |||||| ||| |||| Sbjct 3492 CAAGCTTGCCTCGCC 3478 >seq67281 Length=12622 Score = 123 bits (136), Expect = 1e-23 Identities = 316/479 (66%), Gaps = 9/479 (2%) Strand=Plus/Plus Query 66261 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66320 ||| || | ||| | | ||||||||||| || || || ||| | ||| || || Sbjct 8673 CACGCCATTGACGCCCACTACGCCAAGGCTCTGGGCGTCGACATTGACGCGCTGTACGTC 8732 Query 66321 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66380 ||||||||| | || || | || |||||||||| ||| ||| ||| ||| || Sbjct 8733 TCGCAGCCGGACTCGGGTGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGA 8792 Query 66381 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66440 | | || | |||| || | ||| |||||| || ||||||||||| || ||||| ||| Sbjct 8793 GCGGTGGACCTCGTGGTGCTCGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTGGAA 8852 Query 66441 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 66500 || || || |||||| || | | ||||| ||||| |||||| ||||| |||| Sbjct 8853 GGTGAAATGGGGGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGG 8912 Query 66501 AAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTG 66557 |||||||| || | | |||| |||| ||| | | ||| | |||||| | Sbjct 8913 AAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA---TCTTCCTGAACCAGATT 8969 Query 66558 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCT 66617 || ||||| | || | | | || || | ||| || |||| |||| ||| Sbjct 8970 CGTCAGAAGGTGGGAATCAT---CTTTGGATCTCCTGAGGTTACGTCGGGTGGCACGGCG 9026 Query 66618 TTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGC 66677 || | | |||||| || || | |||| | ||||| | | || ||||| ||| Sbjct 9027 CTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGTAAGACGGCCATCAAGGAGGGC 9086 Query 66678 GATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66736 || ||| |||||||||| || ||||||||| | ||||||||| || || |||| Sbjct 9087 GACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGCATCGCC 9145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240747582615600