Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq50881 147 1e-30 seq67281 123 1e-23 >seq50881 Length=8092 Score = 147 bits (162), Expect = 1e-30 Identities = 332/496 (67%), Gaps = 5/496 (1%) Strand=Plus/Minus Query 65906 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 65965 ||||| ||||||||| ||||| || | ||| | | ||||||||||| || ||||| || Sbjct 3969 CGCCTTCATCGACGCAGAGCATGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 3910 Query 65966 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66025 | | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 3909 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 3850 Query 66026 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66085 ||| ||| ||| || | || | |||| || | ||| |||||| || ||||| Sbjct 3849 TACGCTCATCAGGTCGGGAGCCGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCTCTGGT 3790 Query 66086 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66145 |||||| || ||||| || || || || || ||| || | | ||||| ||||| || Sbjct 3789 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 3730 Query 66146 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAAC-ACGCTGACGC 66204 |||| ||||| |||| |||||||| || | | |||| ||||| | || | Sbjct 3729 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACT-ATTA 3671 Query 66205 TCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCA 66264 ||| | |||||| | || ||||| | || | | | || ||| | ||| | Sbjct 3670 TCTTCCTGAACCAGATTCGTCAGAAGGTGGGGATCAT---CTTCGGATCTCCTGAGGTTA 3614 Query 66265 CCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCG 66324 | |||| |||| || || | | |||||| || || | |||| | ||||||| Sbjct 3613 CGTCGGGTGGCACAGCGCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAAGA 3554 Query 66325 CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGA 66384 | || ||||| ||||| ||| |||||||||| || ||||||||| | |||| Sbjct 3553 CGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCGAAGA 3494 Query 66385 ACAAGCTGGCCCCGCC 66400 ||||||| ||| |||| Sbjct 3493 ACAAGCTTGCCTCGCC 3478 >seq67281 Length=12622 Score = 123 bits (136), Expect = 1e-23 Identities = 316/479 (66%), Gaps = 9/479 (2%) Strand=Plus/Plus Query 65925 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 65984 ||| || | ||| | | ||||||||||| || || || ||| | ||| || || Sbjct 8673 CACGCCATTGACGCCCACTACGCCAAGGCTCTGGGCGTCGACATTGACGCGCTGTACGTC 8732 Query 65985 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66044 ||||||||| | || || | || |||||||||| ||| ||| ||| ||| || Sbjct 8733 TCGCAGCCGGACTCGGGTGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGA 8792 Query 66045 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66104 | | || | |||| || | ||| |||||| || ||||||||||| || ||||| ||| Sbjct 8793 GCGGTGGACCTCGTGGTGCTCGACAGTGTGGCAGCTCTGGTGCCGCGTGCGGAGCTGGAA 8852 Query 66105 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 66164 || || || |||||| || | | ||||| ||||| |||||| ||||| |||| Sbjct 8853 GGTGAAATGGGGGACCAGCAGATTGCACTGCAGGCGCGACTCATGAGTCAGGCGCTGCGG 8912 Query 66165 AAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTG 66221 |||||||| || | | |||| |||| ||| | | ||| | |||||| | Sbjct 8913 AAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA---TCTTCCTGAACCAGATT 8969 Query 66222 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCT 66281 || ||||| | || | | | || || | ||| || |||| |||| ||| Sbjct 8970 CGTCAGAAGGTGGGAATCAT---CTTTGGATCTCCTGAGGTTACGTCGGGTGGCACGGCG 9026 Query 66282 TTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGC 66341 || | | |||||| || || | |||| | ||||| | | || ||||| ||| Sbjct 9027 CTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGTAAGACGGCCATCAAGGAGGGC 9086 Query 66342 GATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66400 || ||| |||||||||| || ||||||||| | ||||||||| || || |||| Sbjct 9087 GACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAAGAACAAACTTGCATCGCC 9145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242208693442364