Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq53744 253 2e-62 seq71182 248 8e-61 >seq53744 Length=11616 Score = 253 bits (280), Expect = 2e-62 Identities = 474/693 (68%), Gaps = 5/693 (1%) Strand=Plus/Plus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || || || || || |||||||| || || || ||||| | ||| || | || || Sbjct 2142 GGAGATCGCACGGGAACGGGGACGCTGTCGGTCTTCGGAGCGCAGATGCGCTTCAGTCTG 2201 Query 34211 CGGGGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||| | | || ||| |||| ||||| || || || | ||| ||||||| ||| Sbjct 2202 AGGGACAATGTGTTCCCGTTGCTCACGACCAAGCGCGTCTTTTGGCGTGGCGTGGCGGAG 2261 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||||||||||||||| | || || | ||||| | | ||| | || | Sbjct 2262 GAGCTGCTGTGGTTCATCAGTGGCGACACGAGTGCGCACACGCTGCAGCAGAAGGATATC 2321 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||||| ||||||| || || | |||||||| || || | | || || Sbjct 2322 CACATCTGGGACGGCAACGGGTCGCGGGAGTATCTGGACAGTCGAGGACTGCAGTCGCGA 2381 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | |||||| | || ||||||||||| ||||||||| | || |||||||| |||| Sbjct 2382 GAAGTTGGCGACCTCGGGCCGGTCTACGGCTTCCAGTGGCGTCATTTTGGGGCCAAGTAC 2441 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGA 34506 || | | || ||||| | || ||||| | ||||||||| || | | || ||| | Sbjct 2442 ACGGACATGCATGCCGACTACACTGGTCAGGGCGTGGACCAGCTCGCCG-AGGTTATCCA 2500 Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566 || || ||| || |||| | |||||||| ||| |||||||| ||| ||| Sbjct 2501 CAAGCTGCGCACGAATCCGACTGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGGA 2560 Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626 |||| | |||||||||||| |||||||||| |||| ||||||||||| || | || Sbjct 2561 TCTCAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGTCAATTCTACGTGGCCGACGG 2620 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 ||| |||||||||| | || || || |||| |||||||| | || ||||||||||| Sbjct 2621 CGAGTTGTCCTGCCAAATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAA 2680 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746 || || || ||||| |||| ||| || | || || || ||| || ||||| Sbjct 2681 TATCGCCAGCTACGCGTTGCTTACGCGACTGGTAGCGCAGGTGAGTGGGCTGAAGCCTGG 2740 Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCG 34806 ||| | || ||| | || ||||| || | || ||||||||| |||||| ||||| Sbjct 2741 CGAGTTTGTCCATGTTATTGGCGATGCCCACGTGTATCTGAACCACGTCGAGCCGCTCCA 2800 Query 34807 GATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 || ||||| ||| ||| || || ||||| Sbjct 2801 GAAGCAGCTTACTCGAACGCCGCGCCCATTCCC 2833 Score = 253 bits (280), Expect = 2e-62 Identities = 474/693 (68%), Gaps = 5/693 (1%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 ||||| || || ||| ||| ||||| || ||||| |||||| ||||||||| || Sbjct 2833 GGGAATGGGCGCGGCGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACGTGGTTCAGATAC 2774 Query 6566 ATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCG 6625 | || ||||| || | ||| || | ||| ||||| || ||| || || || Sbjct 2773 ACGTGGGCATCGCCAATAACATGGACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCT 2714 Query 6626 ATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCT 6685 | || ||| |||| ||||| || || || ||||||||||| || | |||||||| Sbjct 2713 ACCAGTCGCGTAAGCAACGCGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGTCG 2654 Query 6686 CCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGG 6745 |||| || || || | |||||||||| ||| || | || ||||||||||| |||| Sbjct 2653 GCCGAGCGCTGGTACATTTGGCAGGACAACTCGCCGTCGGCCACGTAGAATTGACAGAAC 2594 Query 6746 GTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACG 6805 |||||||||| |||||||||||| | ||||||| ||| |||||||| ||| |||| Sbjct 2593 ATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCACG 2534 Query 6806 ATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGC 6864 |||| | |||| || ||| || ||| ||| || | | || ||||||||| | Sbjct 2533 ATCCGACGGTCAGTCGGATTCGTGCGCAGCTTGTGGATAACCT-CGGCGAGCTGGTCCAC 2475 Query 6865 TCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTG 6924 ||||| || | ||||| || | | || |||| |||||||| || | |||||| Sbjct 2474 GCCCTGACCAGTGTAGTCGGCATGCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTG 2415 Query 6925 GAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAG 6984 ||| ||||||||||| || | |||||| | || || || | | || || ||||||| Sbjct 2414 GAAGCCGTAGACCGGCCCGAGGTCGCCAACTTCTCGCGACTGCAGTCCTCGACTGTCCAG 2355 Query 6985 AAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGT 7044 | | || || ||||||| |||||||||| | | || | ||| | | Sbjct 2354 ATACTCCCGCGACCCGTTGCCGTCCCAGATGTGGATATCCTTCTGCTGCAGCGTGTGCGC 2295 Query 7045 GTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACG 7104 ||||| | || || | |||||||||||||||||| ||||||| ||| | || || Sbjct 2294 ACTCGTGTCGCCACTGATGAACCACAGCAGCTCCTCCGCCACGCCACGCCAAAAGACGCG 2235 Query 7105 TTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAA 7161 || ||||| |||| ||| || | | ||| || || | || ||| | ||||| Sbjct 2234 CTTGGTCGTGAGCAACGGGAACACATTGTCCCTCAGACTGAAGCGCATCTGCGCTCCGAA 2175 Query 7162 CACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 || || || |||||||| || || || || || Sbjct 2174 GACCGACAGCGTCCCCGTTCCCGTGCGATCTCC 2142 >seq71182 Length=8880 Score = 248 bits (274), Expect = 8e-61 Identities = 473/694 (68%), Gaps = 7/694 (1%) Strand=Plus/Plus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || || || || || |||||||| || || || ||||| | ||| || | || || Sbjct 2142 GGAGATCGCACGGGAACGGGGACGCTGTCGGTCTTCGGAGCGCAGATGCGGTTCAGTCTG 2201 Query 34211 CGGGGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||| | | || ||| |||| ||||| || || || | |||| ||||||| ||| Sbjct 2202 AGGGACAACGTGTTCCCGTTGCTCACGACCAAGCGCGTCTTCTGGCGCGGCGTGGCGGAG 2261 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||||||||||||||| | || || | ||||| | | ||| | || | Sbjct 2262 GAGCTGCTGTGGTTCATCAGTGGAGACACGAGTGCGCACACGCTGCAGCAGAAGGACATC 2321 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||||| | ||||| || || | |||||||| || || | | || ||| Sbjct 2322 CACATCTGGGACGGCAATGGGTCGCGGGAGTATCTGGACAGTCGAGGACTGCAGTCGCGG 2381 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | |||||| | || ||||||||||| ||||||||| | ||||||||||| |||| Sbjct 2382 GAAGTTGGCGACCTTGGACCGGTCTACGGCTTCCAGTGGCGTCACTTTGGGGCCAAGTAC 2441 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507 || | | || ||||| | || ||||| | ||||||||| | || || || Sbjct 2442 ACGGACATGCACGCCGACTACACTGGCCAGGGCGTGGACCAGCTCACCGAGGTTATTCAC 2501 Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567 | || ||| || ||| | |||||||| ||| |||||||| ||| |||| Sbjct 2502 AAGCTGCGCACGAATCCGACCGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGGAT 2561 Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGG 34627 ||| | |||||||||||| |||||||||| ||||||| |||||||| || | || Sbjct 2562 CTCAATGAGATGGCGCTCCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGA 2621 Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687 ||| ||||||||||| | || || || |||| |||||||| | || ||||||||||| Sbjct 2622 GAGTTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAAT 2681 Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747 || || || ||||| |||| ||| |||| || || || || || ||||| Sbjct 2682 ATCGCCAGCTACGCGTTGCTTACGCGACTGATAGCACAGGTGAGTGGACTGAAGCCTGGC 2741 Query 34748 GAGCTGGTGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCC 34805 ||| | || | |||| | || ||||| || | || || |||||| |||||| ||||| Sbjct 2742 GAGTTTGTCC--ACGTTATTGGTGATGCCCACGTGTATCTCAACCACGTCGAGCCGCTCC 2799 Query 34806 GGATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 || ||||| ||| ||| || | |||||| Sbjct 2800 AGAAGCAGCTTACTCGAACGCCGCGCCTGTTCCC 2833 Score = 248 bits (274), Expect = 8e-61 Identities = 473/694 (68%), Gaps = 7/694 (1%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 |||||| | || ||| ||| ||||| || ||||| |||||| |||||| || || Sbjct 2833 GGGAACAGGCGCGGCGTTCGAGTAAGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATAC 2774 Query 6566 ATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAG 6623 | || ||||| || | |||| | || | ||| ||||| || || || || | Sbjct 2773 ACGTGGGCATCACCAATAACGT--GGACAAACTCGCCAGGCTTCAGTCCACTCACCTGTG 2716 Query 6624 CGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGT 6683 | |||| ||| |||| ||||| || || || ||||||||||| || | ||||||| Sbjct 2715 CTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGT 2656 Query 6684 CTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGA 6743 | |||| || || || | ||||||||||| ||| || | || |||||||| ||||||| Sbjct 2655 CGGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCCGTCGGCCACGTAGAACTGGCAGA 2596 Query 6744 GGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCA 6803 |||||||||| |||||||||||| | ||||||| ||| |||||||| ||| || Sbjct 2595 ACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCA 2536 Query 6804 CGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCG 6863 |||||| | ||| || ||| || ||| || || | ||||||||| Sbjct 2535 CGATCCGACGGTCGGTCGGATTCGTGCGCAGCTTGTGAATAACCTCGGTGAGCTGGTCCA 2476 Query 6864 CTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACT 6923 | ||||| || | ||||| || | | || |||| ||||||||||| | ||||| Sbjct 2475 CGCCCTGGCCAGTGTAGTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAGTGACGCCACT 2416 Query 6924 GGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCA 6983 |||| ||||||||||| || | |||||| | ||||| || | | || || |||||| Sbjct 2415 GGAAGCCGTAGACCGGTCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCA 2356 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGG 7043 || | || || ||||| | |||||||||| | | || | ||| | | Sbjct 2355 GATACTCCCGCGACCCATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCG 2296 Query 7044 TGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACAC 7103 ||||| | || || | |||||||||||||||||| ||||||| |||| | || | Sbjct 2295 CACTCGTGTCTCCACTGATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGC 2236 Query 7104 GTTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGA 7160 | || ||||| |||| ||| || | | ||| || || | || ||| | |||| Sbjct 2235 GCTTGGTCGTGAGCAACGGGAACACGTTGTCCCTCAGACTGAACCGCATCTGCGCTCCGA 2176 Query 7161 ACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 | || || || |||||||| || || || || || Sbjct 2175 AGACCGACAGCGTCCCCGTTCCCGTGCGATCTCC 2142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447857103551040