Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7695 109 4e-19 seq10229 100 2e-16 >seq7695 Length=5764 Score = 109 bits (120), Expect = 4e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || || ||||| || || ||||| ||||| || || | | Sbjct 5507 AATGCAGATTTTCGTCAAGACGCTGACGGGTAAGACCATCACGCTCGACGTGGAGCCGTC 5566 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| | |||| | | || || || ||| ||||| || || | ||||| || || Sbjct 5567 GGACTCGATTGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 5626 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || ||||| |||| ||||| | |||| ||||| Sbjct 5627 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 5686 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 5687 CATCCAGAAGGAGTCGAC 5704 >seq10229 Length=4391 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | ||||| || || ||||| ||||| || || | | Sbjct 2526 AATGCAGATTTTCGTCAAGACGTTGACGGGCAAGACCATCACGCTCGACGTAGAGCCGTC 2585 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| | | || | | || || || ||| ||||| || || | ||||| || || Sbjct 2586 GGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCA 2645 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || ||||| |||| ||||| | |||| ||||| Sbjct 2646 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 2705 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 2706 CATCCAGAAGGAGTCGAC 2723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337711628904656