Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq62796 152 1e-31 seq62410 149 1e-30 seq10229 141 2e-28 seq7695 136 9e-27 seq51638 134 3e-26 seq1442 114 3e-20 seq56688 96.9 8e-15 seq42745 96.9 8e-15 seq42744 96.9 8e-15 seq41581 96.9 8e-15 >seq62796 Length=4303 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 |||||||| || || || || || || | ||||| ||| || || | || || || Sbjct 2905 ACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCA 2846 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 |||||||| ||||||||||| || || || ||||| ||||| || || |||||||| ||| Sbjct 2845 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 2786 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||||||||| || ||||| | ||| || | |||||||| | ||||||||||||| Sbjct 2785 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTG 2726 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||| ||| || | ||| | ||||| Sbjct 2725 CCCGTCAGAGTCTTCACGAAGATCTGCAT 2697 Score = 116 bits (128), Expect = 9e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || || | ||||| ||| || || Sbjct 3882 ACGAAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGT 3823 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||||||||| || || Sbjct 3822 GCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCC 3763 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 |||||||| |||||||||||||| || ||||| | ||| || | |||||||| Sbjct 3762 CTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTC 3706 Score = 96.9 bits (106), Expect = 8e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 225601 GGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTT 225660 ||||| || || |||||||| |||||||||||||| || ||||| | ||| || | Sbjct 3317 GGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGC 3258 Query 225661 TCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | |||||||||||||||||||| ||| || | ||| | ||||| Sbjct 3257 TCCACGTCGAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 3205 >seq62410 Length=6674 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || || | || || ||| || || Sbjct 1634 ACGAAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTCAGCGT 1693 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||||||||| || || Sbjct 1694 GCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCC 1753 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||||||||| || ||||| | ||| || | |||||||| | Sbjct 1754 CTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 1813 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||||| || || | ||| | ||||| Sbjct 1814 CGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1855 >seq10229 Length=4391 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 2738 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 2679 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||||||||| || || |||||||| Sbjct 2678 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 2619 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||||| ||||| | ||| || | || ||||| | |||||| ||| Sbjct 2618 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCTACGTCGAGCGTGATGGTC 2559 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||||||||| || || | ||| | |||||| Sbjct 2558 TTGCCCGTCAACGTCTTGACGAAAATCTGCATT 2526 >seq7695 Length=5764 Score = 136 bits (150), Expect = 9e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 5729 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 5670 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 5669 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 5610 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| |||||||| || || | ||| || | |||||||| | Sbjct 5609 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCACGTCGAG 5550 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| ||||| ||||||| || || | ||| | |||||| Sbjct 5549 CGTGATGGTCTTACCCGTCAGCGTCTTGACGAAAATCTGCATT 5507 >seq51638 Length=8654 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 8423 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 8482 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || || |||||||| Sbjct 8483 TCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 8542 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||||| ||||| | ||| || | |||||||| | |||||| ||| Sbjct 8543 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTC 8602 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||| || || | ||| | ||||| Sbjct 8603 TTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 8634 >seq1442 Length=7791 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || || ||| Sbjct 5707 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 5766 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | |||||||| | |||| Sbjct 5767 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCGGACGGCTCCACGTCCAGCGTG 5826 Query 225676 ATCGTCTTGCCCGTCA 225691 || ||||||||||||| Sbjct 5827 ATGGTCTTGCCCGTCA 5842 >seq56688 Length=2816 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 193619 TCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAG 193678 ||| ||| ||||||||||||| || || |||| || || | || || || | ||| Sbjct 1554 TCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAG 1613 Query 193679 ACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCAT 193738 || || || || || |||||||| |||||||| | |||| ||||||||||||||| Sbjct 1614 TCCAGGGGCCTCGTTAGGGCAAAACAGACTCCACTTGCCATTGGCTTCCACCCTCTTCAT 1673 Query 193739 GAAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 ||| || |||| ||||| ||||||||| || Sbjct 1674 GAACAGATCAGGCACCCAAAGGGCGTAGAACAG 1706 >seq42745 Length=3754 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 193619 TCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAG 193678 ||| ||| ||||||||||||| || || |||| || || | || || || | ||| Sbjct 3206 TCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAG 3147 Query 193679 ACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCAT 193738 || || || || || |||||||| |||||||| | |||| ||||||||||||||| Sbjct 3146 TCCAGGGGCCTCGTTAGGGCAAAACAGACTCCACTTGCCATTGGCTTCCACCCTCTTCAT 3087 Query 193739 GAAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 ||| || |||| ||||| ||||||||| || Sbjct 3086 GAACAGATCAGGCACCCAAAGGGCGTAGAACAG 3054 >seq42744 Length=3619 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 193619 TCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAG 193678 ||| ||| ||||||||||||| || || |||| || || | || || || | ||| Sbjct 3071 TCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAG 3012 Query 193679 ACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCAT 193738 || || || || || |||||||| |||||||| | |||| ||||||||||||||| Sbjct 3011 TCCAGGGGCCTCGTTAGGGCAAAACAGACTCCACTTGCCATTGGCTTCCACCCTCTTCAT 2952 Query 193739 GAAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 ||| || |||| ||||| ||||||||| || Sbjct 2951 GAACAGATCAGGCACCCAAAGGGCGTAGAACAG 2919 >seq41581 Length=4797 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 193619 TCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAG 193678 ||| ||| ||||||||||||| || || |||| || || | || || || | ||| Sbjct 1263 TCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAG 1204 Query 193679 ACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCAT 193738 || || || || || |||||||| |||||||| | |||| ||||||||||||||| Sbjct 1203 TCCAGGGGCCTCGTTAGGGCAAAACAGACTCCACTTGCCATTGGCTTCCACCCTCTTCAT 1144 Query 193739 GAAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 ||| || |||| ||||| ||||||||| || Sbjct 1143 GAACAGATCAGGCACCCAAAGGGCGTAGAACAG 1111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191426017238408