Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq71182 132 4e-26 seq53744 127 2e-24 seq64538 100 2e-16 seq57003 91.5 1e-13 seq29366 91.5 1e-13 >seq71182 Length=8880 Score = 132 bits (146), Expect = 4e-26 Identities = 390/605 (64%), Gaps = 22/605 (4%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || ||||||| || || ||||| ||||| || | |||||||||||| || Sbjct 2797 AGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 2738 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | || || | || || || |||| ||| || | | |||||||||||| || Sbjct 2737 GGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATATTG 2678 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | |||||| || | ||||||| Sbjct 2677 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCTCCG 2618 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 ||| |||||| ||||| | ||||| |||||||| || || ||||| | | Sbjct 2617 TCGGCCACGTAGAACTGGCAGAACATG---TGGCACGGCGGGAGCGCCATCTCATTGAGA 2561 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGTTC----CTGA 29939 || || ||||| || ||| | ||| || | ||| || | | || | || Sbjct 2560 TCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATTCGTGCGCAGCTTG 2501 Query 29940 TG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNN 29998 || | || ||| | ||||| ||||| ||| || | |||||| | Sbjct 2500 TGAATAACCTCGGTG------AGCTGGTCCACGCCCTGGCCAGTGTAGTCGGCGTGCATG 2447 Query 29999 NNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30058 | || || | ||||||||| ||||| |||||||| ||||| || Sbjct 2446 TCCGTGTACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGGTCCAAGGTCGCCA 2387 Query 30059 TCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAG 30118 |||||| || | || | |||||| | | || | || || ||| |||||||| Sbjct 2386 ACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCCATTGCCGTCCCAG 2327 Query 30119 ATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30178 || | | |||||| ||| | | | ||| || |||| |||||||||| Sbjct 2326 ATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACTGATGAACCACAGC 2267 Query 30179 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TG 30234 ||||||||| | ||| | ||| ||||| | |||||||||||| | || ||| || Sbjct 2266 AGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAACGGGAACACGTTG 2207 Query 30235 TCCCT 30239 ||||| Sbjct 2206 TCCCT 2202 >seq53744 Length=11616 Score = 127 bits (140), Expect = 2e-24 Identities = 389/605 (64%), Gaps = 22/605 (4%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || ||||||| || || ||||| ||||| || | ||||||||||| || Sbjct 2797 AGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACATGGACAAACTCGCCA 2738 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | ||||| | || || || | || ||| || | | |||||||||||| || Sbjct 2737 GGCTTCAGCCCACTCACCTGCGCTACCAGTCGCGTAAGCAACGCGTAGCTGGCGATATTG 2678 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | ||||| || | ||| ||| Sbjct 2677 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATTTGGCAGGACAACTCGCCG 2618 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 ||| |||||| || |||| ||||| |||||||| || || ||||| | | Sbjct 2617 TCGGCCACGTAGAATTGACAGAACATG---TGGCACGGCGGGAGCGCCATCTCATTGAGA 2561 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGT-----TCCTG 29938 || || ||||| || ||| | ||| || | ||| || | | || | || Sbjct 2560 TCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCAGTCGGATTCGTGCGCAGCTTG 2501 Query 29939 ATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNN 29998 || || ||||| ||||| ||||| ||| || | |||||| | Sbjct 2500 TGGATAACCTCGGCG------AGCTGGTCCACGCCCTGACCAGTGTAGTCGGCATGCATG 2447 Query 29999 NNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCC 30058 | ||||| | ||||||||| ||||| ||||| || ||||| || Sbjct 2446 TCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGGCCCGAGGTCGCCA 2387 Query 30059 TCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAG 30118 |||| | || | || | |||||| | | || | || |||||| |||||||| Sbjct 2386 ACTTCTCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCCGTTGCCGTCCCAG 2327 Query 30119 ATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGC 30178 || | | |||||| ||| | | | ||| || |||| |||||||||| Sbjct 2326 ATGTGGATATCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATGAACCACAGC 2267 Query 30179 AGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGGGAA---ACTG 30234 ||||||||| | ||| | ||||||||| | |||||||||||| | ||||| | || Sbjct 2266 AGCTCCTCCGCCACGCCACGCCAAAAGACGCGCTTGGTCGTGAGCAACGGGAACACATTG 2207 Query 30235 TCCCT 30239 ||||| Sbjct 2206 TCCCT 2202 >seq64538 Length=4600 Score = 100 bits (110), Expect = 2e-16 Identities = 194/284 (68%), Gaps = 2/284 (1%) Strand=Plus/Minus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| |||||| | |||||| || | | ||| || | | ||| | ||| | Sbjct 3190 ACTCG-ATCTTCTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGTTTGACGGGGAAGTCC 3132 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 || | | ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| Sbjct 3131 TCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACG 3072 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 ||||| || ||| || ||||| || || || || ||||| | || ||||| | || Sbjct 3071 CCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCGGCGCCACGCGCGCG 3012 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 ||| ||| ||| | | | | ||||||||||| || ||| || ||||| | | Sbjct 3011 TAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCG 2952 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTCGTAACCGGCGGC 50144 |||| |||| | || ||| |||| |||||| ||| ||||| Sbjct 2951 GGGATCACGGCATCGTAAGCAGCCGACAGGTCCAGACCCGCGGC 2908 >seq57003 Length=3684 Score = 91.5 bits (100), Expect = 1e-13 Identities = 192/284 (68%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| |||||| | |||||| || | | ||| || | | ||| | ||| | Sbjct 494 ACTCG-ATCTTCTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGTTTGACGGGGAAGTCC 552 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 || | | ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| Sbjct 553 TCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACG 612 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 ||||| || ||| || ||||| || || || || ||||| | || ||||| | || Sbjct 613 CCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGCCCGGAGCGCGGCGCCACGCGCGCG 672 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 ||| || ||| | | | | ||||||||||| || ||| || ||||| | | Sbjct 673 TAGCATCCGTCGGGTACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCG 732 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTCGTAACCGGCGGC 50144 |||| ||| | || ||| |||| |||||| ||| ||||| Sbjct 733 GGGATTACGGCATCGTAAGCAGCCGACAGGTCCAGACCCGCGGC 776 >seq29366 Length=1830 Score = 91.5 bits (100), Expect = 1e-13 Identities = 192/284 (68%), Gaps = 2/284 (1%) Strand=Plus/Minus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| |||||| | |||||| || | | ||| || | | ||| | ||| | Sbjct 915 ACTCG-ATCTTCTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGTTTGACGGGGAAGTCC 857 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 || | | ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| Sbjct 856 TCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACG 797 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 ||||| || ||| || ||||| || || || || ||||| | || ||||| | || Sbjct 796 CCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGCCCGGAGCGCGGCGCCACGCGCGCG 737 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 ||| || ||| | | | | ||||||||||| || ||| || ||||| | | Sbjct 736 TAGCATCCGTCGGGTACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCG 677 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTCGTAACCGGCGGC 50144 |||| ||| | || ||| |||| |||||| ||| ||||| Sbjct 676 GGGATTACGGCATCGTAAGCAGCCGACAGGTCCAGACCCGCGGC 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405805148354152