Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq71182 163 2e-35 seq53744 163 2e-35 seq64538 105 5e-18 seq57003 96.9 3e-15 seq29366 96.9 3e-15 >seq71182 Length=8880 Score = 163 bits (180), Expect = 2e-35 Identities = 410/618 (66%), Gaps = 24/618 (4%) Strand=Plus/Minus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || ||||| | || || ||||| || || || | |||| Sbjct 2809 AGCTGCTTCTGGAGCGGCTCGACGTGGTTGAGATACACGTGGGCATCACCAATAACGTGG 2750 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 2749 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 2690 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 |||||||| || || || || || || |||||||| |||| | |||||| | ||| || Sbjct 2689 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 2630 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | |||||| ||| ||||| ||||| || | ||||||||| || || ||||| Sbjct 2629 GACAACTCTCCGTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT- 2571 Query 27370 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 27424 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 2570 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 2514 Query 27425 TGTTC----CTGATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 27479 || | || || | || ||| | ||||| ||||| ||| || | ||| Sbjct 2513 CGTGCGCAGCTTGTGAATAACCTCGGTG------AGCTGGTCCACGCCCTGGCCAGTGTA 2460 Query 27480 GTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGG 27539 ||| | |||||||||||||| || || || || | ||| ||||| ||||| ||||| Sbjct 2459 GTCGGCGTGCATGTCCGTGTACTTGGCCCCAAAGTGACGCCACTGGAAGCCGTAGACCGG 2400 Query 27540 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 27599 ||| ||||| || |||||| || | || | |||||| | | || | || || Sbjct 2399 TCCAAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCC 2340 Query 27600 GTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 27659 ||| |||||||||| | | |||||| ||| | | | ||| || || Sbjct 2339 ATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCACT 2280 Query 27660 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 27719 || ||||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | Sbjct 2279 GATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAA 2220 Query 27720 GGGAAAC----TGTCCCT 27733 || ||| ||||||| Sbjct 2219 CGGGAACACGTTGTCCCT 2202 >seq53744 Length=11616 Score = 163 bits (180), Expect = 2e-35 Identities = 410/618 (66%), Gaps = 24/618 (4%) Strand=Plus/Minus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || ||||| | ||| || ||||| || || || | ||| Sbjct 2809 AGCTGCTTCTGGAGCGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACATGG 2750 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 |||||||| || || | ||||| | || || || | || ||| || | | |||| Sbjct 2749 ACAAACTCGCCAGGCTTCAGCCCACTCACCTGCGCTACCAGTCGCGTAAGCAACGCGTAG 2690 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 |||||||| || || || || || || |||||||| |||| | |||||| | || || Sbjct 2689 CTGGCGATATTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATTTGGCAG 2630 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | ||| || ||| ||||| || ||||| | ||||||||| || || ||||| Sbjct 2629 GACAACTCGCCGTCGGCCACGTAGAATTGACAGAACATGTGGCACGGCGGGAGCGCCAT- 2571 Query 27370 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGGT 27424 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 2570 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCAGTCGGATT 2514 Query 27425 TGT-----TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 27479 || | || || || ||||| ||||| ||||| ||| || | ||| Sbjct 2513 CGTGCGCAGCTTGTGGATAACCTCGGCG------AGCTGGTCCACGCCCTGACCAGTGTA 2460 Query 27480 GTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGG 27539 ||| | |||||||||||||| || || ||||| | ||| ||||| ||||| ||||| Sbjct 2459 GTCGGCATGCATGTCCGTGTACTTGGCCCCAAAATGACGCCACTGGAAGCCGTAGACCGG 2400 Query 27540 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 27599 || ||||| || |||| | || | || | |||||| | | || | || || Sbjct 2399 CCCGAGGTCGCCAACTTCTCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGACCC 2340 Query 27600 GTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 27659 |||| |||||||||| | | |||||| ||| | | | ||| || || Sbjct 2339 GTTGCCGTCCCAGATGTGGATATCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCGCCACT 2280 Query 27660 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GA 27718 || ||||||||||||||||||| | ||| | ||||||||| | |||||||||||| | Sbjct 2279 GATGAACCACAGCAGCTCCTCCGCCACGCCACGCCAAAAGACGCGCTTGGTCGTGAGCAA 2220 Query 27719 GGGGAA---ACTGTCCCT 27733 ||||| | ||||||| Sbjct 2219 CGGGAACACATTGTCCCT 2202 >seq64538 Length=4600 Score = 105 bits (116), Expect = 5e-18 Identities = 207/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 44826 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 44885 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 3213 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 3154 Query 44886 GCCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 44945 || | ||||| | ||| | | | | ||| ||||| || ||||| | |||||| Sbjct 3153 TCCGCGTTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 3094 Query 44946 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 45005 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 3093 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 3034 Query 45006 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTT 45065 ||| | || ||||| | ||||| ||| ||| | | ||||||||||||||| Sbjct 3033 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 2974 Query 45066 TACCAGGGCCCTGCCTAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 45125 || ||| || |||| | ||||| |||| | || ||| |||| |||||| ||| Sbjct 2973 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCATCGTAAGCAGCCGACAGGTCCAGACC 2914 Query 45126 CGCGGC 45131 |||||| Sbjct 2913 CGCGGC 2908 >seq57003 Length=3684 Score = 96.9 bits (106), Expect = 3e-15 Identities = 205/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 44826 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 44885 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 471 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 530 Query 44886 GCCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 44945 || | ||||| | ||| | | | | ||| ||||| || ||||| | |||||| Sbjct 531 TCCGCGTTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 590 Query 44946 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 45005 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 591 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGCCC 650 Query 45006 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTT 45065 ||| | || ||||| | ||||| || ||| | | ||||||||||||||| Sbjct 651 GGAGCGCGGCGCCACGCGCGCGTAGCATCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 710 Query 45066 TACCAGGGCCCTGCCTAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 45125 || ||| || |||| | ||||| ||| | || ||| |||| |||||| ||| Sbjct 711 GACGAGGCCCTTGCCGCCCGCGGGGATTACGGCATCGTAAGCAGCCGACAGGTCCAGACC 770 Query 45126 CGCGGC 45131 |||||| Sbjct 771 CGCGGC 776 >seq29366 Length=1830 Score = 96.9 bits (106), Expect = 3e-15 Identities = 205/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 44826 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 44885 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 938 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 879 Query 44886 GCCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 44945 || | ||||| | ||| | | | | ||| ||||| || ||||| | |||||| Sbjct 878 TCCGCGTTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 819 Query 44946 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 45005 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 818 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGCCC 759 Query 45006 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTT 45065 ||| | || ||||| | ||||| || ||| | | ||||||||||||||| Sbjct 758 GGAGCGCGGCGCCACGCGCGCGTAGCATCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 699 Query 45066 TACCAGGGCCCTGCCTAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 45125 || ||| || |||| | ||||| ||| | || ||| |||| |||||| ||| Sbjct 698 GACGAGGCCCTTGCCGCCCGCGGGGATTACGGCATCGTAAGCAGCCGACAGGTCCAGACC 639 Query 45126 CGCGGC 45131 |||||| Sbjct 638 CGCGGC 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369181462313492