Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq68014 118 4e-22 seq51922 118 4e-22 seq51824 118 4e-22 >seq68014 Length=15274 Score = 118 bits (130), Expect = 4e-22 Identities = 196/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| ||||||||| | |||||||||| || | | | | Sbjct 6586 CCATGCACATGTGCGTGGCCTCGATGACCACAGCCACGCCCTTGGGCTCAATGACGCCCA 6645 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCG--AGCATA 31122 | |||| |||||||| | ||||| || |||||||| |||| ||||| || | | Sbjct 6646 TGATGGCGTTGGCGATCTGCTTGGTGAGTCGCTCCTGCACCTGCAAACGGCGCGAGAAGA 6705 Query 31123 CATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCT 31182 | | | | | ||| || ||||||| || |||| | |||||||| ||||||| Sbjct 6706 CCTCGCTGACGCGCGCGA--GCTTGCTGAGCCCCAGCACCTTGCCGTTCGGGATGTAGCC 6763 Query 31183 GATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGG 31240 ||| ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | | Sbjct 6764 GAT-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCG 6821 Query 31241 ATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 ||||||||||| | ||||||| ||| || | |||| Sbjct 6822 ATGTCGCGCACGATGACCATCTCGTCGTGGTCCTCC 6857 >seq51922 Length=7288 Score = 118 bits (130), Expect = 4e-22 Identities = 196/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| ||||||||| | |||||||||| || | | | | Sbjct 4353 CCATGCACATGTGCGTGGCCTCGATGACCACAGCCACGCCCTTGGGCTCAATGACGCCCA 4294 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCG--AGCATA 31122 | |||| |||||||| | ||||| || |||||||| |||| ||||| || | | Sbjct 4293 TGATGGCGTTGGCGATCTGCTTGGTGAGTCGCTCCTGCACCTGCAAACGGCGCGAGAAGA 4234 Query 31123 CATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCT 31182 | | | | | ||| || ||||||| || |||| | |||||||| ||||||| Sbjct 4233 CCTCGCTGACGCGCGCGA--GCTTGCTGAGCCCCAGCACCTTGCCGTTCGGGATGTAGCC 4176 Query 31183 GATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGG 31240 ||| ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | | Sbjct 4175 GAT-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCG 4118 Query 31241 ATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 ||||||||||| | ||||||| ||| || | |||| Sbjct 4117 ATGTCGCGCACGATGACCATCTCGTCGTGGTCCTCC 4082 >seq51824 Length=12621 Score = 118 bits (130), Expect = 4e-22 Identities = 196/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| ||||||||| | |||||||||| || | | | | Sbjct 6116 CCATGCACATGTGCGTGGCCTCGATGACCACAGCCACGCCCTTGGGCTCAATGACGCCCA 6175 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCG--AGCATA 31122 | |||| |||||||| | ||||| || |||||||| |||| ||||| || | | Sbjct 6176 TGATGGCGTTGGCGATCTGCTTGGTGAGTCGCTCCTGCACCTGCAAACGGCGCGAGAAGA 6235 Query 31123 CATGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCT 31182 | | | | | ||| || ||||||| || |||| | |||||||| ||||||| Sbjct 6236 CCTCGCTGACGCGCGCGA--GCTTGCTGAGCCCCAGCACCTTGCCGTTCGGGATGTAGCC 6293 Query 31183 GATCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGG 31240 ||| ||| ||| |||| || |||| | | ||| |||||||| ||| ||||| | | | Sbjct 6294 GAT-GTGCACCTTGCCCGTGAACGGCACCATGTGGTGCTCGCACATG-GAGTACAGGTCG 6351 Query 31241 ATGTCGCGCACCGTCACCATCTGGTCATGCTTCTCC 31276 ||||||||||| | ||||||| ||| || | |||| Sbjct 6352 ATGTCGCGCACGATGACCATCTCGTCGTGGTCCTCC 6387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187128729002752