Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq71182 86.0 4e-12 >seq71182 Length=8880 Score = 86.0 bits (94), Expect = 4e-12 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 1160 CGCCGGAACGTGGTATCCGCATGGAA--CGTCGGTGACCTCAGCGACATGGCACTTCACC 1217 || |||| |||| | || || ||||| || ||| | |||| || ||||| || | | Sbjct 2526 CGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGG--ATCTCAATGAGATGGCGCTCCCGC 2583 Query 1218 CGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTG-CAGGTCTAC 1276 |||||||||| | | |||| | ||||| | |||||| | | || ||| ||| | ||| Sbjct 2584 CGTGCCACATGTTCTGCCAGTTCTACGTGGCCGACGGAGAGTTGTC-CTGCCAGATGTAC 2642 Query 1277 CAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCG 1330 |||||| || |||||| || || |||||||||||||||||| |||||| Sbjct 2643 CAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAATATCGCCAGCTACGCG 2696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295870146651132