Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1442 114 3e-20 seq62796 111 4e-19 seq51638 107 4e-18 seq10229 100 7e-16 seq62410 98.7 2e-15 seq7695 96.9 8e-15 seq36052 84.2 5e-11 >seq1442 Length=7791 Score = 114 bits (126), Expect = 3e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | || | || || || || || ||||||||||| Sbjct 5677 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 5736 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | || ||| || ||||| || || ||||| || |||||| | || Sbjct 5737 AGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 5796 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||||| || ||| || || || || || || |||||||| || |||||||| ||| Sbjct 5797 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 5856 Query 152097 ACCTGCATTTTACCCT 152112 | |||||| | |||| Sbjct 5857 ATCTGCATGATTCCCT 5872 >seq62796 Length=4303 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| || || || ||||| || || |||||||| ||| | || | || || || Sbjct 2905 ACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCA 2846 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || |||||||| || | ||||||||| | || ||| || ||||| || || Sbjct 2845 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 2786 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || ||||| ||||| | || | ||| || ||| || || || || || || ||| Sbjct 2785 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTTG 2726 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||||||||||| |||||| Sbjct 2725 CCCGTCAGAGTCTTCACGAAGATCTGCAT 2697 >seq51638 Length=8654 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| ||| | || | || || Sbjct 8423 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 8482 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| |||| ||||||||| | || ||| || ||||| || Sbjct 8483 TCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 8542 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || || | || | ||| || ||| || || || || || || Sbjct 8543 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTC 8602 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| ||||||| |||||| Sbjct 8603 TTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 8634 >seq10229 Length=4391 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| ||| | || | || || Sbjct 2738 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 2679 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | || ||| || ||||| || Sbjct 2678 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 2619 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || || | || | ||| || |||||| || || || || || Sbjct 2618 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCTACGTCGAGCGTGATGGTC 2559 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| | ||||| ||||| | ||||||| Sbjct 2558 TTGCCCGTCAACGTCTTGACGAAAATCTGCATT 2526 >seq62410 Length=6674 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || || ||||| || ||| | || | || || Sbjct 1644 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTCAGCGTGCGACCGTCC 1703 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | || ||| || ||||| || Sbjct 1704 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 1763 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||||| ||||| | || | ||| || ||| || || || || || || Sbjct 1764 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTC 1823 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||||||||||| |||||| Sbjct 1824 TTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 1855 >seq7695 Length=5764 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| ||| | || | || || Sbjct 5719 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 5660 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | || ||| || ||||| || Sbjct 5659 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 5600 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || || | || | ||| || ||| || || || || || || Sbjct 5599 TGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTCCACGTCGAGCGTGATGGTC 5540 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || ||||| ||||| | ||||||| Sbjct 5539 TTACCCGTCAGCGTCTTGACGAAAATCTGCATT 5507 >seq36052 Length=4305 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 151992 GCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC 152051 ||||| | || ||||| || |||||||| || |||||| | || | |||||| || | Sbjct 2870 GCCGACTTACCCTCCTTGTCCTGAATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGC 2811 Query 152052 TCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || ||||||||||| ||||| ||||| | |||||| || Sbjct 2810 TCCACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 2755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152751492246772