Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1442 140 2e-28 seq51638 138 8e-28 seq62796 132 3e-26 seq7695 132 3e-26 seq62410 120 2e-22 seq10229 118 8e-22 seq36052 96.9 2e-15 seq20999 96.9 2e-15 seq8913 96.9 2e-15 seq637 96.9 2e-15 >seq1442 Length=7791 Score = 140 bits (154), Expect = 2e-28 Identities = 149/195 (76%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | ||| ||| |||| || |||||||| ||||| |||| Sbjct 5675 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 5734 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||||||| || | || | || ||||| ||| || |||||||| || ||| Sbjct 5735 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 5794 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||| |||||| | ||||| |||| ||| || ||||| ||||| ||||||||||| Sbjct 5795 --CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 5852 Query 44326 GAAGATTTGCATGAT 44340 ||||| |||||||| Sbjct 5853 AAAGATCTGCATGAT 5867 >seq51638 Length=8654 Score = 138 bits (152), Expect = 8e-28 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| ||| || ||| |||| || Sbjct 8425 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 8484 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| |||||||| || | || | || ||||| ||| Sbjct 8485 CAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 8544 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||||| | | || | ||| | | ||||| || | ||| || ||||| Sbjct 8545 AATCTTCTGCTTCACGTTGTCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTCTT 8604 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || ||||| |||||||| |||||| Sbjct 8605 GCCCGTCAGCGTCTTGACGAAGATCTGCATG 8635 >seq62796 Length=4303 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | |||||| ||||| ||||| |||||| || |||||||| || Sbjct 2927 CATGCCACCGCGCAGACGCAACACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC 2868 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| || || ||||||| ||||||||| || | Sbjct 2867 GCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 2808 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||||| | | | || | ||| | | || Sbjct 2807 CGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTC 2748 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||| |||||||| ||||| || |||||||||||||| ||||| Sbjct 2747 CACGTCGAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 2697 >seq7695 Length=5764 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| ||||| |||||| ||||||||||| || Sbjct 5738 CATGCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 5679 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| ||||| ||||| | |||||||| || | Sbjct 5678 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 5619 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||||||||||| | | || | ||| | | || Sbjct 5618 CGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCAATCGAGTCCGACGGCTC 5559 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||| || ||||| ||||| || ||||| ||||| || ||||| Sbjct 5558 CACGTCGAGCGTGATGGTCTTACCCGTCAGCGTCTTGACGAAAATCTGCAT 5508 >seq62410 Length=6674 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| || ||||| || ||| || ||| |||| || Sbjct 1646 CACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTCAGCGTGCGACCGTCCTC 1705 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||||| |||||||| || | || | || ||||| ||| Sbjct 1706 AAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 1765 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | | || | ||| | | ||||| || | ||| |||||||| Sbjct 1766 GATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGATCGTCTT 1825 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || |||||||||||||| |||||| Sbjct 1826 GCCCGTCAGCGTCTTCACGAAGATCTGCATG 1856 >seq10229 Length=4391 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| ||| || ||| |||| || Sbjct 2736 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 2677 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||| | |||||||| || | || | || ||||| ||| Sbjct 2676 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 2617 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||||| | | || | ||| | | || || || | ||| || ||||| Sbjct 2616 AATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCTACGTCGAGCGTGATGGTCTT 2557 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||| ||||| || ||||| Sbjct 2556 GCCCGTCAACGTCTTGACGAAAATCTGCAT 2527 >seq36052 Length=4305 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||||||||||| ||||||||||| || | || ||| |||| || Sbjct 3043 CACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 2984 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||| ||||| ||||||| |||||||| || Sbjct 2983 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 2948 >seq20999 Length=2285 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||||||||||| ||||||||||| || | || ||| |||| || Sbjct 261 CACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 202 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||| ||||| ||||||| |||||||| || Sbjct 201 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 166 >seq8913 Length=3353 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||||||||||| ||||||||||| || | || ||| |||| || Sbjct 2025 CACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 2084 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||| ||||| ||||||| |||||||| || Sbjct 2085 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 2120 >seq637 Length=2185 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||||||||||| ||||||||||| || | || ||| |||| || Sbjct 851 CACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 910 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||| ||||| ||||||| |||||||| || Sbjct 911 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359673051812844