Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cambivora_20[genbank_20GCA_5F000443045.1_202013-08- 07] 72,332 sequences; 230,616,123 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq62410 176 4e-39 seq7695 176 4e-39 seq62796 172 5e-38 seq51638 154 1e-32 seq1442 154 1e-32 seq10229 149 6e-31 seq36052 140 3e-28 seq20999 140 3e-28 seq8913 140 3e-28 seq637 140 3e-28 seq64538 89.7 5e-13 seq57003 86.0 6e-12 seq29366 86.0 6e-12 >seq62410 Length=6674 Score = 176 bits (194), Expect = 4e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| |||||||| |||||||||||||||||||||| Sbjct 1629 CCACCACGAAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTC 1688 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 1689 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 1748 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| |||||||| ||| | | | | ||| || |||||| Sbjct 1749 ATGCCCTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCAC 1807 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | ||| ||||| || |||||||||||||| ||||| ||||||||| Sbjct 1808 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 1856 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | |||||| |||| ||| ||||||||||||||| |||||| Sbjct 1856 GCCACCGCGCAGACGCAGCACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGCT 1915 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTG 41742 || ||||| |||| || ||||||||||| ||||| ||||| ||||| Sbjct 1916 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTG 1963 >seq7695 Length=5764 Score = 176 bits (194), Expect = 4e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 5735 GCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 5676 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||||||||| || |||||||| ||||| | || Sbjct 5675 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 5616 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || || |||||| ||| | | | | ||| || ||||| Sbjct 5615 GATGCCCTCCTTGTCCTGAATCTTCTGCTTC-ACGTTGTCAATCGAGTCCGACGGCTCCA 5557 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | ||| || || ||||||||||||||||| |||||||||||||| Sbjct 5556 CGTCGAGCGTGATGGTCTTACCCGTCAGCGTCTTGACGAAAATCTGCAT 5508 >seq62796 Length=4303 Score = 172 bits (190), Expect = 5e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| ||||| || |||||||| ||||||||||||||| |||||| Sbjct 2924 GCCACCGCGCAGACGCAACACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 2865 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 2864 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 2805 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| |||||||| ||| | | | | ||| || ||||| Sbjct 2804 GATGCCCTCCTTGTCCTGGATCTTTTGCTT-GACGTTGTCGATCGAGTCCGACGGCTCCA 2746 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | ||| ||||| || |||||||| ||||| ||||| |||||||| Sbjct 2745 CGTCGAGCGTGATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 2697 Score = 129 bits (142), Expect = 5e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| |||||||| ||||||||||||||| |||||| Sbjct 3887 CCACCACGAAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 3828 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 3827 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 3768 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 | || |||||||||| ||| |||||||| Sbjct 3767 ATGCCCTCCTTGTCCTGGATCTTTTGCTT 3739 >seq51638 Length=8654 Score = 154 bits (170), Expect = 1e-32 Identities = 163/212 (77%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||| |||||||| ||||||||| ||||| |||||| || ||||| |||| || Sbjct 8425 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 8484 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||||||||| ||||| ||||| ||||| | || | || |||||||||| Sbjct 8485 CAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 8544 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || || |||||| ||| | | | | ||| || |||||| || | ||| || || | Sbjct 8545 AATCTTCTGCTTC-ACGTTGTCGATCGAGTCAGACGGCTCCACGTCGAGCGTGATGGTCT 8603 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||||||||||||| ||||| ||||||||| Sbjct 8604 TGCCCGTCAGCGTCTTGACGAAGATCTGCATG 8635 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 7950 CCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 8009 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT 41733 || ||||| |||| || ||||||||||||||||| || Sbjct 8010 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGAT 8047 >seq1442 Length=7791 Score = 154 bits (170), Expect = 1e-32 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 5675 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 5734 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||| | || | || |||||||||| |||||| ||||| || | Sbjct 5735 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTT-GACATTG 5793 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | ||||| || |||||| |||| ||| || || || |||||||| ||||| || Sbjct 5794 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 5853 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 5854 AAGATCTGCATG 5865 >seq10229 Length=4391 Score = 149 bits (164), Expect = 6e-31 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||| |||||||| ||||||||| ||||| |||||| || ||||| |||| || Sbjct 2736 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 2677 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||||||||| || |||||||| ||||| | || | || |||||||||| Sbjct 2676 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 2617 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || || |||||| ||| | | | | ||| || ||| || || | ||| || || | Sbjct 2616 AATCTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCTACGTCGAGCGTGATGGTCT 2558 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||| |||||| |||||||||||||| Sbjct 2557 TGCCCGTCAACGTCTTGACGAAAATCTGCAT 2527 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| |||||||| ||||||||| ||||| |||||| Sbjct 3211 CCACCACGCAGCCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 3152 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATAT 41733 || ||||| |||| || ||||||||||||||||| || Sbjct 3151 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGAT 3114 >seq36052 Length=4305 Score = 140 bits (154), Expect = 3e-28 Identities = 104/122 (85%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || ||||| ||||| | |||||| |||||||||||||||||||| ||||| ||||| Sbjct 3063 CCACCACCGCGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 3004 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | | Sbjct 3003 GAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 2944 Query 41753 GG 41754 || Sbjct 2943 GG 2942 >seq20999 Length=2285 Score = 140 bits (154), Expect = 3e-28 Identities = 104/122 (85%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || ||||| ||||| | |||||| |||||||||||||||||||| ||||| ||||| Sbjct 281 CCACCACCGCGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 222 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | | Sbjct 221 GAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 162 Query 41753 GG 41754 || Sbjct 161 GG 160 >seq8913 Length=3353 Score = 140 bits (154), Expect = 3e-28 Identities = 104/122 (85%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || ||||| ||||| | |||||| |||||||||||||||||||| ||||| ||||| Sbjct 2005 CCACCACCGCGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 2064 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | | Sbjct 2065 GAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 2124 Query 41753 GG 41754 || Sbjct 2125 GG 2126 >seq637 Length=2185 Score = 140 bits (154), Expect = 3e-28 Identities = 104/122 (85%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || ||||| ||||| | |||||| |||||||||||||||||||| ||||| ||||| Sbjct 831 CCACCACCGCGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCC 890 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| |||| || ||||||||||||||||| ||||||||||| ||||| | | Sbjct 891 GAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 950 Query 41753 GG 41754 || Sbjct 951 GG 952 >seq64538 Length=4600 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 85788 GGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTG 85847 ||||||||| || | || || || ||||| ||||| |||| | |||||| | Sbjct 3004 GGCTGCTACGCGCGCGTGGCGCCGCGCTCCGGACTCGCGCTCAAGAAGTTCATCGACACG 3063 Query 85848 GGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907 |||||||| || |||||||||||||||||||| ||||| | | | || ||||||||| Sbjct 3064 GGCGCCGGCGTGATCGACGCCGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCAC 3123 Query 85908 GGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAAA 85967 | | ||||| | ||| | || |||||| ||||| ||| ||||| || || Sbjct 3124 GCGGCCGAGGACTTCCCCGTCAAACGCGGAGACCGCGTGGCGCAGCTCATCCTCGAGAAG 3183 Query 85968 ATCCACTATTCCGACATACAAGAAGTG 85994 ||| | || | || || || || ||| Sbjct 3184 ATCGAGTACCCGGAGATCCAGGAGGTG 3210 >seq57003 Length=3684 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 85788 GGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTG 85847 || |||||| || | || || || ||||| ||||| |||| | |||||| | Sbjct 680 GGATGCTACGCGCGCGTGGCGCCGCGCTCCGGGCTCGCGCTCAAGAAGTTCATCGACACG 621 Query 85848 GGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907 |||||||| || |||||||||||||||||||| ||||| | | | || ||||||||| Sbjct 620 GGCGCCGGCGTGATCGACGCCGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCAC 561 Query 85908 GGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAAA 85967 | | ||||| | ||| | || |||||| ||||| ||| ||||| || || Sbjct 560 GCGGCCGAGGACTTCCCCGTCAAACGCGGAGACCGCGTGGCGCAGCTCATCCTCGAGAAG 501 Query 85968 ATCCACTATTCCGACATACAAGAAGTG 85994 ||| | || | || || || || ||| Sbjct 500 ATCGAGTACCCGGAGATCCAGGAGGTG 474 >seq29366 Length=1830 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 85788 GGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTG 85847 || |||||| || | || || || ||||| ||||| |||| | |||||| | Sbjct 729 GGATGCTACGCGCGCGTGGCGCCGCGCTCCGGGCTCGCGCTCAAGAAGTTCATCGACACG 788 Query 85848 GGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907 |||||||| || |||||||||||||||||||| ||||| | | | || ||||||||| Sbjct 789 GGCGCCGGCGTGATCGACGCCGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCAC 848 Query 85908 GGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAAA 85967 | | ||||| | ||| | || |||||| ||||| ||| ||||| || || Sbjct 849 GCGGCCGAGGACTTCCCCGTCAAACGCGGAGACCGCGTGGCGCAGCTCATCCTCGAGAAG 908 Query 85968 ATCCACTATTCCGACATACAAGAAGTG 85994 ||| | || | || || || || ||| Sbjct 909 ATCGAGTACCCGGAGATCCAGGAGGTG 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461886007838400