Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq467 154 3e-32 seq1022 113 1e-19 seq4292 107 4e-18 seq2411 91.5 3e-13 >seq467 Length=26285 Score = 154 bits (170), Expect = 3e-32 Identities = 671/1049 (64%), Gaps = 37/1049 (4%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| | ||||| ||||| |||||||||| ||| |||||| Sbjct 13135 CTCCTTGTCCTCACCGGACTGGAAGCGCCACTGGATGTACTGGTTGGCCGTCTCGTCAAG 13194 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 ||| ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 13195 GTGAGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGCAGGGTG 13254 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 13255 CTTCCACACCTGGCCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 13314 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| ||| | ||| |||| | | ||| || || ||| Sbjct 13315 CTTACCGGCACCGTTGGGGCCAAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCACC- 13372 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | | | |||| || | | | || | |||||| |||||| | | || Sbjct 13373 --GAAATGTTGTTGATCGACG----GCTTCGGGGCACCCGGGTACTTGTA-CGAGCAGTT 13425 Query 319282 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 || || ||||||| |||| ||||| | | ||||| || ||||| || Sbjct 13426 GGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATATCAGCCAGGAAACCAGGCTCCGG 13485 Query 319341 GAACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACG 319397 |||| | || | | ||| || ||| || ||||||| | | ||||| Sbjct 13486 GAACGTGAACTTCACGTTCTCCGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGCTT 13542 Query 319398 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 319457 || || |||||| | ||| || || |||||||| |||||||||| || | || || Sbjct 13543 CTGCTCCACGAATTTGGAAAGGTTACCCTTGTAGATCTTCAGCTTGCGG---GTCTCATA 13599 Query 319458 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 319517 |||||||| ||| || || ||||||||| || |||||||| ||||| || | | | Sbjct 13600 GTGGATAATGTTGGTACACACGTTGTCGAGGAAGCCAGAGTCGTGAGACACCATGATGGA 13659 Query 319518 CGAAACGTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACAGAA 319575 | || | | | || ||||||| ||| |||| ||| ||||| ||| Sbjct 13660 GGTGACCGTCGGCACGCTGGTCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACATCC 13717 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 319635 | ||||| |||||||| ||||||||||| | | || ||||| ||||| ||||| | Sbjct 13718 AAGTGGTTCGTCGGCTCATCAAGAAGCAGAATGTCAGCCTTCAGCAGCATGGCACGCGAC 13777 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCA 319695 || |||||||||| ||||| || || || || | | | | || || ||| Sbjct 13778 AGCTCGAGTTTCATCTTCCAACCACCCGACAGGGAGCCCACGGCCTGAGCCTGCATCTCG 13837 Query 319696 ATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTTTCC 319755 ||||| || | || | | ||| || | || | | || ||| Sbjct 13838 GGGGTGAAGCCGACGTCGCCAAGGGCGTTCTCGACCTCCTTGCGGG---GAGTG---TCC 13891 Query 319756 TTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGACCCGTCG 319815 || | | ||||| | |||||||| | | | | | || || || | | Sbjct 13892 TTCAGGTCGTCATCGATCAGGATGAAGTCGACCACCGACAGCTCAGCCTCCGAAGCCTGC 13951 Query 319816 AGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGG 319875 || | ||| || ||| | |||| |||| | ||| |||||| || || |||||| Sbjct 13952 AGGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCCTTGCTGGGGAAGCCCTCGAGCTGG 14011 Query 319876 CCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCG 319935 ||||| |||| |||||||| || || || ||||| ||||| || || ||||||||| Sbjct 14012 CCGTTGGCAATGGCGCGCATGAGCGTCGACTTACCACAACCGTTGGGGCCGCACAGACCG 14071 Query 319936 TAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATAT 319995 || |||| || || || ||| | || | ||||||||| ||||| | ||||| || Sbjct 14072 TAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCGTAG 14131 Query 319996 GCCAGAGAAAATTCACAATCACACAGATC 320024 || || || || || || | ||||| || Sbjct 14132 GCAAGCGAGAACTCGCAGTTGCACAGGTC 14160 >seq1022 Length=12964 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 12910 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 12851 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12850 CCCACGGTGGGC 12839 >seq4292 Length=2137 Score = 107 bits (118), Expect = 4e-18 Identities = 262/387 (68%), Gaps = 14/387 (4%) Strand=Plus/Plus Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||| ||||||| ||||| ||| || | ||||||||||| | | || ||| Sbjct 494 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAAC 553 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCAAA 230348 ||| | ||||| || ||||||||| | || | |||| || || | ||||| || || Sbjct 554 GAGCTGATCAGCCGTGACGAGGGTATGCACACGGACTTCG-CGTGCCTCATGTACTCCAA 612 Query 230349 GCTCCAGAACAAGCTACCATTCGAGACG-GTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 ||| ||||||||| || ||| || || | | || | || || || | | Sbjct 613 GCTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATTGTGCGCGACGCGGTGGTGA 671 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAA 230466 ||| | |||||| | | ||| | | || ||| | || || ||||||||| | | Sbjct 672 TCGAGCACGAGTTCGTGCGCGACTCGCTCCC-TGTGGAGCTGATCGGCATGAACTCGGCG 730 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACT---TGGTTAC 230523 || ||| | ||||||||||| ||||| |||||||| | || || ||| ||| | Sbjct 731 CTCATGTGCCAGTACATCGAGTTCGTGGCCGACCG----TCTGCTGTACTCGCTGGGTGT 786 Query 230524 GAGAAAG-TGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGG 230582 | |||| | |||||| |||||||| || | | ||||| | || || || || || Sbjct 787 GCCAAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCTCTCTCCAGGG 846 Query 230583 GAAGACCAACTTCTTCGAAAAGCGTGT 230609 ||||||||||||||||| ||||| || Sbjct 847 CAAGACCAACTTCTTCGAGAAGCGCGT 873 >seq2411 Length=5525 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 4960 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 4901 Query 165771 CCACG 165775 ||||| Sbjct 4900 CCACG 4896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057745702181510