Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4292 136 4e-27 >seq4292 Length=2137 Score = 136 bits (150), Expect = 4e-27 Identities = 307/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 605 ACATGAGGCACGCGAAGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGA 546 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||||| || || ||||| | ||| || || | | ||| || || | Sbjct 545 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCG 486 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| |||| || ||||| | | || || | ||||| || | Sbjct 485 AGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGACGACACAC 426 Query 17136 T-GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | ||||| | ||| | ||| ||||| || Sbjct 425 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTCG 367 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| | | | || || ||| ||| | || |||||||| ||||| || Sbjct 366 ATGGCGCGCAGCAGGTGGTCCTTCTCCACGGCGTCCTTGATGTACGTATCAATGAGCAGC 307 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||||| |||| ||| |||||||| ||||| ||||| || ||||| ||||| ||| | Sbjct 306 GAGTACACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGACC 247 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCGT 17372 || | | || ||||| | ||| |||| || || || |||||||| || |||| Sbjct 246 TCGGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACAATACCGT 189 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||||| ||||| ||||||| | ||||| ||||| Sbjct 188 CGCTCGCAGCGAAGAACGCCAGCACGTGCTTGATGAA 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517508226738360