Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4292 116 4e-21 >seq4292 Length=2137 Score = 116 bits (128), Expect = 4e-21 Identities = 305/458 (67%), Gaps = 8/458 (2%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || ||||| || | Sbjct 605 ACATGAGGCACGCGAAGTCCGTGTGCATACCCTCGTCACGGCTGATCAGCTCGTTCGAGA 546 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 545 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCC 487 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATC 16371 || ||||| || ||||| || | || || || | | || |||| ||||| | || Sbjct 486 GAGAAGAAAATGCCCTCCACGGCGGCGAACGCCAGCAGACGCTCCGGGTACGACGACACA 427 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || | ||| || | |||| | ||||| | || | || ||||| || Sbjct 426 CGCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACGCACGGGATCGTCTC 368 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 ||||| | || | || || ||| || | || ||||||||||| || | Sbjct 367 GATGGCGCGCAGCAGGTGGTCCTTCTCCACGGCGTCCTTGATGTACGTATCAATGAGCAG 308 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||||| || | ||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 307 CGAGTACACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGGAC 248 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCG 16609 ||| | | || ||||| | || |||| ||||||||||| ||||| |||||| Sbjct 247 CTCGGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACAATACCG 190 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || ||||| || ||||||| | |||||| ||||| Sbjct 189 TCGCTCGCAGCGAAGAACGCCAGCACGTGCTTGATGAA 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511377469487640