Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20cinnamomi_20[genbank_20GCA_5F001314365.1_202015-10- 14] 5,777 sequences; 53,691,444 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1844 235 6e-57 >seq1844 Length=5900 Score = 235 bits (260), Expect = 6e-57 Identities = 473/688 (69%), Gaps = 15/688 (2%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| || || || || || ||||| || || || | ||||| | || || || Sbjct 1810 AGCGGCTCGACATGATTCAGATACACGTGGGCATCTCCAATAACGTGAACAAACTCTCCA 1869 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| | || | | || || |||| || | || |||| | |||||| || || || Sbjct 1870 GGCTTCAATCCAGCCACCTGCGCAACCA-GTCGCGTAAGCAATGCGTAGCTAGCGATATT 1928 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| ||||||||||||||| ||||||||| ||||| || Sbjct 1929 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGAAAGCTCGCC 1988 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | | ||||||||||||||||| | | |||||| ||||| || ||||| | || || Sbjct 1989 GTCGGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATCTCATTGAGATC 2048 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCC 145982 |||||| ||||| || | || |||| | | | | |||||| | | || Sbjct 2049 CGCCGGATTCCACGCCGACAGCACGATGCGGCGGTCCGTCGGGTTCGTGCGCAGCTTGTG 2108 Query 145983 TATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGT 146041 || | || |||||||||||||||||| || |||||| | | || | |||| || Sbjct 2109 GATAACCCCCGCGAGCTGGTCCACGCCCTGGCCAGTGTAATC-GGCATGCATGTCCGTGT 2167 Query 146042 ACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCC 146101 || ||| || || |||| ||||||||| |||||||| || || ||||| || ||| | Sbjct 2168 ACTTGGCGCCAAAATGCCGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCCACCTCTC 2227 Query 146102 TGTGCC-CCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 | ||| |||||| | | | || | || || ||| | ||| |||||||||| | | Sbjct 2228 -GCGCCTGCAGCCCTCGACTGTCCAGATACTCGCGCGACGCATTGCCGTCCCAGATGTGG 2286 Query 146161 ACGCCCCTC-GCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTC 146219 | | || || || | ||| | | | ||| || ||||||||||| |||||||| Sbjct 2287 ATGTCCTTCTGCTG-CAGCGAGTGCGCGCTGGTGTCGCCGCTGATGAACCACAGCAGCTC 2345 Query 146220 TTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCG 146276 ||| || || | |||||| || | |||||| || ||||| |||||| | | ||| Sbjct 2346 CTCGGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGCGGGAACACGTTGTCCCT 2405 Query 146277 CAGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTC--C 146334 ||| | || ||| | |||||||| ||||| |||||| ||||| | ||| | Sbjct 2406 GAGGCTGAACCGCATCTGCGCGCCGAAGACCGACAGCGTGCCCGTCCCCGTGCGGTCTGC 2465 Query 146335 CCCCTGCGCACCCCGTTCGCCAGGATCT 146362 | || || ||| || | |||||||| Sbjct 2466 GCGCTCGGCTCCCTGT--GTCAGGATCT 2491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590034189079080